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Webinars on Offerings & Capabilities
… . You can find additional webinars covering how to use our data portals here.  … … Shining a Light: Advanced Photon …
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Next generation sequencing and bioinformatic bottlenecks: the current state of metagenomic data analysis
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Strategic Integration of Multiple Bioinformatics Resources for System Level Analysis of Biological Networks
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Biases in genome reconstruction from metagenomic data
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JGI@25: Using Team Science to Build Communities Around Data
… (Graphic: Neil Byers) The JGI launched the 1000 Fungal Genomes (1KFG) Project through a 2012 Community Science … of Georgia, along with 100 of his colleagues in the comparative plant genomics community. The project’s aim is … genomes that are both large and complex. The first publication of a genome generated by the OGG initiative — …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… order of magnitude. For years, scientists at the DOE Joint Genome Institute, a DOE Office of Science user facility … expertise in developing and maintaining the JGI’s  Integrated Microbial Genomics and Microbiomes (IMG/M) … CheckV , which assesses the quality and completeness of metagenome-assembled viral genomes ( Nature Biotechnology , …
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How to Submit Sequencing Samples
GenTegra RNA Preparation Procedure … 1) Complete Sample Metadata form Sample metadata is collected via spreadsheet or … sends Project Manager (PM) a list of organism names (or for metagenomes, sample names).  Need help naming your organisms? …
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David Goodstein
… gene models in support of JGI’s contributions to the Human Genome Project, he began developing larger comparative genomic systems as the JGI’s eukaryote research … plant genomics.      Nucleic Acids Research 40, D1178. Publications … Scientific Advisory Board member, InterMine …
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Supporting community annotation and user collaboration in the integrated microbial genomes (IMG) system
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User Programs
… accepted proposals, sequencing, synthesis, metabolomics and analysis will be paid for by the Department of Energy’s …
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Natural Prodcast Episode 17: Cassandra Quave
… early stage drug discovery in general, and a possible data-driven future for plant natural products. Happy … I think on COVID that we’re getting ready to submit for publication and have found some interesting hits for that as … it’s not that easy. There are still not that many plant genomes, certainly nowhere close to bacterial kinds of …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who was … recently selected as the 2025 recipient of the Microbiome Data Prize by the American Society for Microbiology (ASM). Roux leads the Viral Genomics group within the JGI Metagenome Program, and coordinates the development of the …
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