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Mike Sneddon
… Dr. Sneddon is the Advanced Analysis Group Lead in the Data Science and Informatics Department at the Joint Genome Institute. His team of … bioinformatics pipelines and a laboratory information management (LIMS) system. He previously led the NGS Software … Liu, O., Akiva, E., Eyles, T. H., Galm, U., Ganesh, S., Hendrix, S. L. B., Hwang, W. W., Kim, J. …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers nearly tripled the available … over 26,000 publicly available metagenomes in the JGI's IMG portal for mitochondrial ribosomal RNA sequences. The … The work conducted by the U.S. Department of Energy Joint Genome Institute …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… Large-scale comparative analysis leads to identification of biosynthetic … on the JGI’s Integrated Microbial Genomes & Microbiomes ( IMG/M ) portal. As part of a comparative analysis, 824 new … resource, but also yielding and supporting many high-impact publications ,” emphasized Markus Göker, who managed the …
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Synthetic Biology Informatics Group
… Software engineers in the Synthetic Biology Informatics Group develop, deploy, and maintain software that support the JGI’s … CRISPR gRNA design tool BOOST , which provides a suite of tools to automate sequence design for assembly by Gibson, …
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Searching for fat tails in CRISPR-Cas systems: Data analysis and mathematical modeling
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IMG ER: a system for microbial genome annotation expert review and curation
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… As SIP experiments shed more light on microbial communities than ever … — JGI researchers and collaborators work to create FAIR datasets to maximize returns on these advances. Over the … a  few years ago, researchers can request quantitative SIP analysis as a capability in proposal calls to the U.S. …
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User Executive Committee Charter
… The JGI User Executive Committee (UEC) represents the JGI user community and is … including areas where more or less capacity is needed, new capabilities desired, or capabilities that could be …
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New and Improved: Eucalyptus Reference is Now Accessible
… An improved genome assembly to support targeted tree breeding for the bioeconomy.   The Science Researchers report a new reference genome for eucalyptus in the July edition of … having genomic resources to develop molecular breeding tools has been critical. The new improved genome assembly …
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IMG Webinar Series
… Find a series of webinars related to our Integrated Microbial Genomics & Microbiomes portal. …
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Statement on the Use of Genomics Data
… The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is … of genomics through open access to resources and promoting data sharing to accelerate discovery and maximize the … are requested to be held until a specified date, or the publication date, whichever comes first. For nearly 40 …
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Supporting community annotation and user collaboration in the integrated microbial genomes (IMG) system
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