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IMG-ABC: new features for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery in thousands of microbial genomes
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Temporal dynamics in a red alga dominated geothermal feature in Yellowstone National Park
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The IMG/M data management and analysis system v.7: content updates and new features.
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Feature selection and causal analysis for microbiome studies in the presence of confounding using standardization
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When “The Blob” Made It Hotter Under the Water
… impact on marine microbial communities. The Science A team of researchers tracked the impact of a large-scale heatwave … from the atmosphere and keeps it in the deep ocean. With genomic samples collected before, during and after The Blob, … water about a third the size of the United States began forming in Alaska. Over the next two years it slowly spread, …
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Picking Up Threads of Cotton Genomics
… growing on plants, with fluffy white bolls bursting out of the green pods in every direction. There are 100 million … Science “The results described in this  Nature Genetics publication will facilitate deeper understanding of cotton … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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A Community Resource for Secondary Metabolite Researchers
… user engagement. The Science In addition to the core set of "primary metabolites"—chemical compounds shared by most … more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence … available to the research community, each offering specific features or tools. The U.S. Department of Energy (DOE) Joint …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
For many scientists, the culmination of their work into a written report that is published in a … current PhD student, reached this milestone with a recent publication in Molecular Biology and Evolution . “It’s my … to learning about how to navigate and analyze large genomic datasets during the internship, Wint also began …
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JGI@25: Using Team Science to Build Communities Around Data
In honor of the JGI's 25th anniversary in 2022, we have revisited a … for an encyclopedia of reference genomes for fungal metagenomics. Two more CSP proposals came in 2016 that would … genomes that are both large and complex. The first publication of a genome generated by the OGG initiative — …
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2024 Progress Report
The Integrative Genomics Building (IGB) seen above is home to the DOE Joint … for a sustainable bioeconomy. Mission  As a U.S. Department of Energy Office of Science user facility, we provide … processed 13,700 metabolomics samples With our users, 247 publications were published   … Our primary objective is to …
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Natural Prodcast Episode 5: Brad Moore
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … Natural Products conference, which took place last January 2020 in San Diego. San Diego, of course, is the “home turf” … the mid-late ’80s. And at that time, you know, it’s before genomics existed. This is before we’re even thinking of …
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An Integrated Dataset to Understand Ecosystem Interaction
… data set  outlined in  Scientific Data connects molecular features to large ecosystem-level processes for the first … data set will help identify how different elements of the ecosystem interact and respond to changes in the … managed through human intervention. By leveraging metagenomics, scientists were able to analyze the DNA of …
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