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… Micro-Scale Applications group explores the genetic makeup of natural microbial communities using a variety of cutting-edge approaches.  Our group also seeks out new … technology in order to enhance the quality of single-cell genomes and directly link functional information with …

… (Graphic: Neil Byers) The JGI launched the 1000 Fungal Genomes (1KFG) Project through a 2012 Community Science … Spatafora of Oregon State University led the effort to sequence 1000 fungal genomes to create two reference genomes … genomes that are both large and complex. The first publication of a genome generated by the OGG initiative — …

… influence in their chosen field or fields through the publication of multiple highly cited papers during the last … the JGI is sequencing thousands of bacterial and archaeal genomes from diverse branches of the Tree of Life.  Its … Nikos Kyrpides  and Simon Roux — features 600 genome sequences for Actinobacteria.  Woyke  was also one of three …

… are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and … and are influenced by microbial partners. We use a variety of genomics-powered tools to study this complexity, … fungi, viruses. Resident viruses can be found in a myriad of bacterial strains, whereby they can modulate host …

… email request reached  Emiley Eloe-Fadrosh , the Metagenome Program Head at the  U.S. Department of Energy (DOE) … samples to the JGI for sequencing.  While JGI processed, sequenced, and analyzed the soil samples, the JGI offered 7 … and organic carbon concentration. From Field Studies to Publication Together as a class, the students learned about …

… decades of technological development, dozens of reference genomes and thousands of resequenced sorghum varieties, a resource for breeders and … Development (USAID) also supported the work.   Publication:  Morris, G.P., Harder, A.M., Healey, A.L.  et … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …

… Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … methods in the past decade, researchers have uncovered genomes for just a small fraction of Earth’s microbial … under laboratory conditions, their genomes can’t be sequenced using traditional approaches. Identifying and …

… The Sequence to Function: Applications and Analysis for the … industry, and government organizations for three days of scientific presentation, interactive panel discussions, … and informal networking events. JGI will present both a genome center talk and a tech talk. Stop by the JGI booth to …

… climate has earned it a place on the JGI’s Flagship Plant Genome roster. Sorghum has an important feature in common … but other important crops as well. In 2009, the JGI sequenced and analyzed the first reference genome for Sorghum bicolor . Since then, 2,993 publications, 107 patent applications, and 53 patents have …

… help solve energy and environmental challenges.   The Human Genome Project began in 1990 when the U.S. Department of … Center, JGI staff worked around the clock to generate the sequences of these three chromosomes. In 2004, they … with the HudsonAlpha Institute for Biotechnology.   Publications Grimwood, J., Gordon, L., Olsen, A. et al. The …