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… The Genome Insider podcast brings listeners into the science that the JGI makes possible. … and fungi to microbes and viruses. Listen in to explore the data that illuminates biology, and hear how it could power …

… The Science The humble lichen is a superorganism: one being that is actually comprised of two (or more) … and the microalga,  Asterochloris glomerata . To see how gene expression changes when living together versus apart, … alga genome) and  MycoCosm (for the fungus genome) to aid analysis. Many of the results were unexpected. For example, …

… fragments and data quality. The Science Through advances in sequencing technologies and computational approaches, … perform functional assessment, host prediction, and phylogenetic analysis. The development of CheckV helps researchers to … The work conducted by the U.S. Department of Energy Joint Genome Institute is supported by the Office of Science …

… A deep dive into microbial genomics reveals one bacterial species is … to determine the genome structure of SAR324 cells and their gene expression, the team then sequenced community genomes … software suite, BBTools , and relying on the JGI Integrated Microbial Genomes & Microbiomes (IMG/M) system . …

… As an Integrative Genome Science User Facility, the JGI plays a … that cross the boundaries of the Plant, Fungal, Algal, Microbial, Metagenome, Metabolomics, Secondary Metabolites, … draw from the infrastructure of Genomic Technologies and Data Science & Informatics. The JGI also sustains a vibrant …

… The CSP New Investigator Call is for investigators and research … FICUS proposal.   Competitive projects will provide pilot data to assess feasibility of a novel approach or form the … accepted proposals, sequencing, synthesis, metabolomics and analysis will be provided for free to the PI by the …

… Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing … and evolved into scalable methods for scientific data analysis. In 2014 Dr. Fagnan became the JGI-NERSC Engagement … Dr. Fagnan was on the organizing committees for the ASCR Integrated Research Infrastructure - Architecture Blueprint …

… common set of metadata. For Steve Wilson, JGI’s Systems Engineering group lead, the Data Portal reflects a structural … through a kingdom portal (assemblies + annotations) For IMG & Mycocosm: Data that is associated with an ITS project … requires that users know about the FY Funding Year, and the publication status in addition to the public/private status. …

… of natural products, Professor Bill Fenical from Scripps Institution of Oceanography in San Diego. Bill is a pioneer … the most effective application, of marine molecules in general. DAN UDWARY: Maybe can you explain to our audience … pellets. So, we’re about ready to send those for genomic analysis. And of course, we don’t know anything about the …

… The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is committed to advancing the … JGI has sustained its commitment to uploading sequence data generated on behalf of its user community to NCBI as well as … are requested to be held until a specified date, or the publication date, whichever comes first. For nearly 40 …

… of flowering plants multiply. Over time, plants lose many genes after such events, returning their genomes to a … polyploidy.” Evaluating Polyploid Genomes in a Pan-genomic Context For the study, partly enabled by the JGI’s  … event (0.14 Mya) with a maternal  B. stacei parent. The analysis also revealed that these two  B. hybridum types …