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Pinning Down a Piece of Photosynthesis
By studying the structure and function of a cyanobacterial … and cyanobacteria create the air we breathe and the fuel for food webs as they turn carbon dioxide and water into … facilities that we worked with are cutting edge in terms of analysis and the fascinating results that we managed to …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… shed more light on microbial communities than ever before — especially with the prospect of meta-analyses boosted … a  few years ago, researchers can request quantitative SIP analysis as a capability in proposal calls to the U.S. … genome-resolved metagenomes and will be implementing new tools in KBase to tackle the bioinformatic challenges …
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Tanja Woyke
Committee member for the Center for Biotechnology and Bioinformatics at Virginia State University (2021-current). … Woyke et al. 2006. Symbiosis insights through metagenomic analysis of a microbial consortium. Nature 443, 950-955.   … … User Programs … Education … Awards and Service … Selected Publications …
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Feature selection and causal analysis for microbiome studies in the presence of confounding using standardization
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Cataloging the Microbes that Manage the Health of River Systems
Database provides details on river microbes in 90% of US … States. They also provided multiple access points to the information. The team harnessed a community-science program to … and agriculture. Understanding the compositions of river microbiomes—who the core microbes are and what they do—can …
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Taking Stock of the Known and Unknown Microbial Space
… the microbial diversity we know about, and proposes a path forward to curate and cultivate what is still unknown.  “We … collection and on the JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) database. In their analysis, the team found that bacterial isolate genomes …
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Adam Reisselman on being a 2016 DOE Computational Science Graduate Fellow
The Department of Energy's Computational Science Graduate Fellowship (DOE CSGF) program was developed to meet the Nation's growing need for science and technology professionals with advanced …
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The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions
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DOE JGI Metagenome Workflow
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… current PhD student, reached this milestone with a recent publication in Molecular Biology and Evolution . “It’s my … to continue expanding her understanding of mathematics and bioinformatics. “I love data, and when you love something, … Relevant Links: Publication: Wint R et al. Kingdom-Wide Analysis of Fungal Protein-Coding and tRNA Genes Reveals …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… race was being waged. In this JGI@25 video, Susan Lucas, former JGI Production Department Head and current ESnet … with the HudsonAlpha Institute for Biotechnology. Publications Grimwood, J., Gordon, L., Olsen, A. et al. The … J., Terry, A. et al. The DNA sequence and comparative analysis of human chromosome 5. Nature. 431, 268–274 (2004). …
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Axel Visel
Institute in Hanover, Germany, where he developed novel tools for large-scale in situ gene expression analysis in multicellular organisms. During his postdoctoral … Computational Biology , Nucleic Acids Research . Over 80 publications in peer-reviewed journals including Nature, …
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