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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… relevant to living on a changing planet. Transcript for Audio   ALISON:  Hey! I’m Alison Takemura at the US … to living on a changing planet. In this short audio production, we’ll hear from Karolina Heyduk, an evolutionary … are open, it’s the same pore in the leaf through which carbon dioxide enters the leaf for photosynthesis.  ALISON:  …
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Restoring wetlands on intensive agricultural lands modifies nitrogen cycling microbial communities and reduces N2O production potential
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A plant host, Nicotiana benthamiana, enables the production and study of fungal lignin-degrading enzymes
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Yasuo Yoshikuni
… of DNA synthesis, strain engineering, and biosystems design for DOE-mission-relevant discovery and applications. This … research focus includes engineering of non-model yeasts for production of biofuels and renewable chemicals, developing genome …
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Natural Prodcast Episode 5: Brad Moore
… and SIO. Oh, I should say what those are. Brad: What’s SIO, for all those listeners out there? Dan: Scripps Institution … Oceanography. And Brad and I, Alison, have known each other for quite a while because Brad was my postdoctoral advisor.  … so we’ve done some work to try to do some elicitation of production and did some meta-T [meta-transcriptomics] on …
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Building Sphagnum Genomic Resources
… data would enable researchers’ insights on their potential carbon cycling impact.   The Science Enabled by the JGI’s … model system focused on carbon cycling studies, rather than for food or fuel applications. The Impact Sphagnum’s impact … regulator since sulfate-reducing microbes prevent methane production by routing the carbon away from methanogens. …
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Acquisition of host-derived carbon in biomass of ectomycorrhizal fungus pisolithus microcarpus is correlated to fungal carbon demand and plant defences.
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Multilab EcoFAB study shows highly reproducible physiology and depletion of soil metabolites by a model grass
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The Sequences of 1504 Mutants in the Model Rice Variety Kitaake Facilitate Rapid Functional Genomic Studies
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Data Ecosystem
… to both expertise and infrastructure to facilitate these efforts. Particular areas of emphasis will be the development … in enabling systems biology analyses, such as metabolic modeling, that go well beyond genome annotation and … and individual genomes to metagenomes to systems-level modeling and understanding. JGI and KBase are designated DOE …
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Exploring microbial functional biodiversity at the protein family level—From metagenomic sequence reads to annotated protein clusters
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Comparative analysis of carboxysome shell proteins
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