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Picking Up Threads of Cotton Genomics
… growing on plants, with fluffy white bolls bursting out of the green pods in every direction. There are 100 million … darwinii are the others. All of these cotton lineages have genomes approximately 2.3 billion bases or Gigabases (Gb) in … for all this new cotton work, and even the original cotton project was to try to bring in molecular methods of breeding …
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IMG/M-HMP: A Metagenome Comparative Analysis System for the Human Microbiome Project
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Frequently Asked Questions: Proposal Submission
See below for a list of Frequently Asked Questions about our proposal submission … ; click on the call link to see specific details including project types supported, sample/capacity limits, and … range from raw sequence data to well-annotated assembled genomes to synthesized DNA constructs to metabolomics data, …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
JGI interests in algae and secondary metabolites. A total of 27 proposals have been  approved through the annual  … products, the proposal includes plans to sequence several thousand Actinobacteria strains and then use computational … from the Tiny Earth collection. The work builds upon a pilot project to sequence antimicrobial-producing strains. …
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Nikos Kyrpides
… 2004 to lead the Genome Biology Program and the development of the comparative analysis platforms for microbial genomes and metagenomes (IMG). He became the … al. 2019 Large-Scale Analyses of Human Microbiomes Reveal Thousands of Small, Novel Genes. Cell. 178(5):1245-1259. …
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Genomic Methods and Microbiological Technologies for Profiling Novel and Extreme Environments for the Extreme Microbiome Project (XMP).
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Prokaryote Program User Advisory Committee
The Prokaryote Advisory Committee is chartered to offer advice, guidance and counsel on the effective management and strategic objectives of the microbial and metagenome programs and report back to …
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Matt Blow
… to study genome regulation in human and other vertebrate genomes. When he joined the JGI, he worked as a project … function in bacteria. Since 2016, he has been the lead of the User Support Analysis group. The group performs … 85(18):e01210-19 Price et al 2018. Mutant phenotypes for thousands of bacterial genes of unknown function. Nature …
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JGI@25: Studying Sorghum’s Survival Skills
In honor of the JGI's 25th anniversary in 2022, we have revisited a … strengths into other plants. A brief timeline of sorghum projects at the JGI: 2009: JGI and collaborators use … this time aligning it with over 50 other diverse sorghum genomes. Deep sequencing and genetic linkage analysis …
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The Physcomitrella patens gene atlas project: large‐scale RNA‐seq based expression data
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Identifying the Microbial Cleanup Crew at a Superfund Site
Analysis reveals the microbial community involved in a bioremediation effort. The … PCE (perchloroethylene) found its way into the groundwater of several communities in New Mexico via leakage from a … by continuing to access the JGI’s  Integrated Microbial Genomes and Microbiomes (IMG/M) system. For example, the …
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The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification
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