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… the JGI product catalog. As a result certain products have been  discontinued , including smRNA, bisulfite sequencing, … in various combinations and cloned into a vector of choice; up to 210,000 variants can be made Pool of variant … (single organism). Note: smRNA sequencing is no longer supported. For annotation: de novo assembly. For counting: …

… live in complex communities, like within soils or the gut, they are difficult to study individually. Many … microbial DNA is manually separated into a few different groups based on its density — DNA containing isotopes is … and sequencing steps. Ultimately, researchers found their updated strategy required one-sixth the labor of the manual …

… ). Once users are notified that their proposal has been accepted, the PMO will assist with initiation of work … ) Coordinate data analysis tool tutorials, as needed Upon completion of all work associated with your proposal, …

… Check this page as further details become available. Sign up for our newsletter to receive updates.    … Stefani Ferreira , JGI Administrative and Logistics Support  …

… a number of environments, including plants, soil, and the gut. To better understand the dynamics of this molecule, … cyclic di-GMP dynamics in plant-pathogen interactions or gut bacteria—environments where fluorescent biosensors are … by the U.S. Department of Energy Joint Genome Institute is supported by the Office of Science of the U.S. Department of …

… Rex Malmstrom, leader of the Microscale Applications group at the JGI, whose team uses a semi-automated, … SIP sample processing. Generating these datasets opens up the possibility of new insights across ecosystems and … reporting and data labeling for these experiments.  This group included Elisha Wood-Charlson, User Engagement Lead for …

… provides sequencing, synthesis, and targeted metabolomics support for DOE-BER funded awards, including awards funded … the BER funding call, proposals are NOT eligible for BERSS support through the JGI (with the exceptions of … call .  Process Proposals may be submitted at any time. Support is limited to work included in the BER-funded …

… of transcription factor binding sites and which has been applied to a wide range of JGI user science projects … L. Flockhart, Greg A. Gregory, Edward Z. Li et al. "Shoring up the base: the development and regulation of cortical … Kothadia, Mario Melara, Elais Player-Jackson et al. "Supporting FAIR Scientific Workflows with the JGI Analysis …

… The focus of this group, in recent years, has been to bring generalizable … For further details, please reach out to the Group Lead …

… scientists out in the field, and developing such tools has been a collaborative effort. For example, with support from the  Exascale Computing Project , the JGI — … Microbial ecologist and JGI user Trina McMahon has been sampling microbes at Lake Mendota, which borders the …

… could be used for renewable fuel. In fact, lipids can make up more than 90 percent of the microbe’s dry weight. In … these gobs of energy, a team of researchers sought to disrupt every gene in the genome with CRISPR-Cas9 in order to … This work was supported by DOE Joint Genome Institute grant  CSP-503076 …