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Secondary Metabolites Program
… characterize bioactive secondary metabolite compounds. To support users, our efforts include developing computational … about the data. It is also a place where the community can upload new data for use by scientists and the public, and …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… marks the JGI’s 25th anniversary. Over the last year, we’ve been revisiting a number of notable achievements that … and environmental challenges.   Usually, plants have the upper hand against any kind of biomass breakdown. They’ve … lives, they all process loads of tough plants. Thanks to gut microbes — namely, anaerobic fungi — these animals are …
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Methane Makers in Yosemite’s Lakes
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… as polyploidy. The multiple copies arise from past genome duplication, which occurs in two basic ways. In “autopolyploids”, genome duplication occurs within a single species. By contrast, … and the  oilseed crop false flax – genomes that have been sequenced by the JGI – and the common strawberry, which …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
Rex Malmstrom, leader of the Microscale Applications group at the JGI, whose team uses a semi-automated, … SIP sample processing. Generating these datasets opens up the possibility of new insights across ecosystems and … reporting and data labeling for these experiments.  This group included Elisha Wood-Charlson, User Engagement Lead for …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… for collecting genomes from microorganisms are shotgun (group) metagenomic sequencing and single-cell (individual) … a sequencer. As previously mentioned, it’s a method that’s been used for years but in most cases, the majority of the … of Energy [DE-AC02-05CH11231]. Dr. Charles Gawad has been supported for this work by a Chan Zuckerberg Biohub …
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
On July 8, JGI’s DNA Synthesis Science group held a  JGI Engagement: Accessing Functional Genomics … we actually started doing when starting the lab. It has been, especially from an early career perspective, been absolutely instrumental in a lot of the work that we …
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Mindfully Moving JGI
Creek, after countless generations of sequencing platforms (up to 120 sequencing machines at maximum) maintained by a … main campus. On Monday, November 11, a week after they’d been  moved to Berkeley , two of the JGI’s sequencing … production runs before the end of the week. “One week up and operating is a great story and a testament to our …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… at the University of Hawai’i at Mānoa. I recently caught up with Karolina at the Plant and Animal Genomes, or PAG … in general, work. KAROLINA:  We all know plants take up water through their roots. But for them to be able to … role. But other plants, which do CAM, can kind of clam up during the day, and open their stomata at night to absorb …
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JGI Advisory Committees Code of Conduct
… collaborative environment free of harassment. To uphold Berkeley Lab’s enduring 90-year legacy of team … from scientists to members of the public whose tax dollars support our continuing contributions to advancing the … or abuse of privileged positions in which the advisor has been implicated that may affect your ability to best serve …
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Events
… where our researchers will be presenting next. Learn about upcoming user-focused webinars and workshops we're hosting. …
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Experimenting with EcoFABs for Student Labs - Jill Bouchard & Ying Wang
To set up flexible, repeatable experiments on plants and microbes, Trent Northen’s group at Berkeley Lab created a fabricated ecosystem – an …
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