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JGI Scientists Pen Genome Watch Articles
… Researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … Nature   Reviews column all started with an email in 2018.  Tanja Woyke , who leads the  Microbial Program at the … pathogen biology. Du Toit invited JGI to write half of the 2019 Genome Watch articles as a way to expose readers to a …
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FICUS-NERSC/KBASE
… The mission of the Joint Genome Institute is to serve the scientific community as a … and readiness to begin work, checking such factors as genome size, polymorphism level, sample quality and …
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Tanja Woyke
… Woyke pursued her postdoctoral research at the DOE Joint Genome Institute in 2004. The main object of her research … 2018-2023 Highly Cited Researcher, Biology and Biochemistry, … Member for ISME J (Senior Editor 2016-2021), Peer J (2015-2019), Scientific Data (2017-2019). Reviewer for major …
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DAS Tool for Genome Reconstruction from Metagenomes
… Developing and validating an integrated approach to genome recovery from metagenomes. The Science Through the JGI’s Emerging Technologies … and automated binning methods also extends to harnessing future binning tools. DAS Tool is an example of how JGI … The work conducted by the U.S. Department of Energy Joint Genome Institute is supported by the Office of Science of …
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Nikos Kyrpides
… Dr. Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the Genome Biology Program and the development of the comparative analysis platforms for microbial genomes and metagenomes (IMG). He became the Metagenomics … (2021) CheckV assesses the quality and completeness of metagenome-assembled viral genomes. Nature Biotechnol . …
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The genome portal of the Department of Energy Joint Genome Institute: 2014 updates
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Scaling Up Existing Skill Sets
… to functional genomics. Hear from five of the Summer 2019 interns, who briefly shared their experiences below. … path of being a researcher in a national laboratory. In the future, I plan to pursue this path and hopefully will be … Year: 3rd year undergraduate student Mentor: Zhong Wang, Genome Analysis What effect has your summer internship with …
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JGI@25: The Little Alga That Could
… of those shared by both humans and flowering plants). Its genome also contains hundreds of genes uniquely associated … (Hear more from on Chlamy from Sabeeha Merchant in this episode of JGIotas, a Genome Insider podcast minisode.) Since the JGI’s early sequencing …
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A Plant Root Atlas for Tracking Developmental Trajectories
… scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … genomics data portal  Phytozome and will be available for future single-cell projects.” The Berkeley Lab  Biosciences … by then-Biosciences scientist Diane Dickel in 2017. In 2019, plant single-cell methods were officially called out …
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The Megadata of Lake Mendota - Part 1: Many, Many Mers
… So a few years ago, when they set out to analyze 500 metagenomes, it was the biggest project the JGI had ever put together.  The next 3 episodes are the story behind that giant assembly from Lake … In this episode: the software evolution that made metagenome assemblies like this possible. …
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Exploring Possibilities: 2022 JGI-UC Merced Interns
… I was introduced into what a government lab and what this future could look like. Edward Lu : I think this internship is gonna help me in the future because it just showed me when people have a goal and … bioformatics, so that’s what I’m gonna take with me to the future.  Shari Larsen : I didn’t grow up with computers, and …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… order of magnitude. For years, scientists at the DOE Joint Genome Institute, a DOE Office of Science user facility … workflows that allow researchers to easily analyze viral genomes. This includes (i) classifying viruses into groups … for one field of research can be harnessed elsewhere. In a  2019 paper , the team applied computational methods and …
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