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The genome portal of the Department of Energy Joint Genome Institute: 2014 updates
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JGI@25: Using Team Science to Build Communities Around Data
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … has “significantly advanced our understanding of 1 billion years of evolution in Kingdom Fungi — from phylogenetic … The Open Green Genomes Initiative is the product of a 2018 Community Science Program proposal from James …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … uncultured in laboratories. Other firsts followed. The next year, the JGI team reported the first closed and finished … deep-sea, oil-eating bacterium from a single cell. Several years later, the continuing single cell sequencing …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… above. Described as a “river of grass” that stretches some 580,000 square miles across southern Florida, they encompass … ranging from wetlands to tree islands to cattails. In 2018, the US Department of Energy (DOE) Joint Genome … comprehensive learning experience.” Over the course of the year, she and other JGI staff conducted several real-time, …
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iPHoP: A Matchmaker for Phages and their Hosts
… to generate a matrix of data points.  Applied to 216,015 high-quality virus sequences in the IMG/VR database, the … Program awarded under UC-DOE Prime Contract DE-AC02-05CH11231. The work conducted by the U.S. Department of … Department of Energy operated under Contract No. DE-AC02-05CH11231 (SR, APC, SN).  …
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Nikos Kyrpides
… dark matter through global metagenomics. Nature . 622(7983):594-602. Camargo AP. et al. (2023) Identification of mobile … virome reveals diverse clades of bacteriophages. Cell . 185(21):4023-4037 Nayfach S, et al. (2021) Metagenomic … Achievement Award (2022) ASM’s USFCC/J. Roger Porter Award (2018) Honorary Doctorate from the Aristotle University of …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… metagenomic sequencing and single-cell sequencing. For years, extracting single cells and then amplifying their DNA … As previously mentioned, it’s a method that’s been used for years but in most cases, the majority of the cell’s genome … of Science of the U.S. Department of Energy [DE-AC02-05CH11231]. Dr. Charles Gawad has been supported for this …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… working virtually with her JGI mentors for nearly three years after her internship. “That level of commitment and … in this publication during her summer internship in 2018. She selected one of the projects posted by JGI fungal … can be found in fossil records dating over a billion years old. It’s an insanely diverse group of organisms that …
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Work With the JGI! Tips for a Winning CSP Proposal
… related to energy and the environment several times a year. A few proposal calls have deadlines coming up – in …
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Meeting Report: “Metagenomics, Metadata and Meta-analysis” (M3) Workshop at the Pacific Symposium on Biocomputing 2010
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Cultivating Symbiotic Antarctic Microbes
… dhesion and  r estriction  e ndonuclease domains—of up to 8,500 amino acids in length. These were actively synthesized … work was supported by the Australian Research Council (DP150100244) and the Australian Antarctic Science program … of the US Department of Energy under contract no. DE-AC02-05CH11231. S.E. was supported by the EMBO Long-Term …
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Strain Engineering
The focus of this group, in recent years, has been to bring generalizable technologies to …
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