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Bioinformatics Analysis Tools for Studying Microbiomes at the DOE Joint Genome Institute
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Natural Prodcast Episode 2: The Primer, Part 2
… has been really crucial.  DAN: Yeah, yeah. The more data you generate, the more knowledge you can generate. So … in the way that they grow.  ALISON: Yeah. Okay, so that bubble is probably filled with secondary metabolites.  DAN: … of Energy Joint Genome Institute, a DOE Office of Science User Facility located at Lawrence Berkeley National Lab. You …
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Automated group assignment in large phylogenetic trees using GRUNT: GRouping, Ungrouping, Naming Tool
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MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities
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The genome of wine yeast Dekkera bruxellensis provides a tool to explore its food-related properties
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EnZymClass: Substrate specificity prediction tool of plant acyl-ACP thioesterases based on ensemble learning
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Development of genetic tools for heterologous protein expression in a pentose‐utilizing environmental isolate of Pseudomonas putida
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gRNA-SeqRET: a universal tool for targeted and genome-scale gRNA design and sequence extraction for prokaryotes and eukaryotes
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Trichoderma sp. strain AM6 whole-genome guided untargeted metabolomics: Terpenoid backbone synthesis and modulation of VOCs in tea (Camellia sinensis L.)
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Statistical analysis of feature-based molecular networking results from non-targeted metabolomics data
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Synthetic Biology Lab
… and assembly group: Our production group operates as user facility that aims to provide access to … the broader community.  We focus our efforts on integrating database mining and sequence design with scaling the … methods for converting digital information from sequence databases into biotechnological or environmental …
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A User-Centered Approach to Accessing JGI Data
… When the JGI Data Portal (https://data.jgi.doe.gov/) launched last year, it was only … plant portal  Phytozome . Now the portal offers a way for users to more easily access public data sets through a … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …
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