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… from plants, microorganisms, and environmental samples using targeted and untargeted approaches. The webinar … would depend on the sample. However, we don’t do this because they typically contain salts and other contaminants that interfere with metabolomics analysis.  Q: Can you give us an idea about the scale of an average study? How many …

…   This highly hands-on workshop is designed to familiarize users with the Integrated Microbial Genomes & Microbiomes … wealth of public microbiome sequence data and enables the user to analyze these data with existing bioinformatic …

… time. By collecting data from 27 different poplar ( Populus trichocarpa ) trees, as well as the soil surrounding … wildlife habitats and water-quality regulation. Focusing on the rhizosphere and interactions between the trees, … to conduct a wide variety of analyses that contribute to a sustainable bioeconomy. Summary The 27 samples studied by …

… With increased lignin and iron, engineered poplar can be used to develop bioproducts for industrial applications. For example, lignin could be used for building materials such as cement or adhesives. … ( https://ror.org/04xm1d337 ), a DOE Office of Science User Facility, and is supported by the Office of Science of …

… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). Using a single-cell screen, they can now identify microbes … which could have a plethora of potential applications to industrial processes. Summary JGI researchers developed a …

… ] The Science The recipe for growing algae as a source of sustainable biofuels seems fairly simple: place these algae … and carbon dioxide so they can grow, and then harvest for use as biofuels and other bioproducts. As any good cook … a clean energy economy is developing alternative sustainable fuel sources. Developing candidate bioenergy …

… those microbial methane-makers. Eventually, that could help us dial back their emissions, while still producing things … collaborators Sinead Leahy (New Zealand Agricultural Greenhouse Gas Research Centre) and Bill Kelly (AgResearch). …

… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … had access to over 100  Dothideomycetes genomes, just enough of a sample size to test if a computer algorithm … (SVM)-based prediction of lifestyle based on 6 gene clusters showed a >95 % accuracy in correctly predicting plant …

… species to grow better than its closest relative S. paradoxus at high temperatures (39°C/102°F). The Impact One of the … DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility of Lawrence Berkeley National Laboratory, aim … a way to map associations between genotype and phenotype using a strategy called reciprocal hemizygosity analysis via …

… the genome. Many plant pathogens such as the fungi that cause poplar leaf rust, are rich in transposons, which may help the pathogens … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, and others like it, are uncovering the true … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office …

… walls, while brown rot cannot break down the lignin but use cellulose. Finally, there are soil saprotrophs, which degrade plant detritus. Despite the different modes of nutrition, many of these … fungal families, including those for which there were previously no genomes of symbiotic species available: 73 …

… for Audio   ALISON:  Hey! I’m Alison Takemura at the US Department of Energy Joint Genome Institute, or JGI.  Two … evolved to deal with hot and dry conditions could help us to one day develop plants that are more drought-tolerant. … along their edges. KAROLINA : My work with the JGI focuses on a group of plants called yuccas. If you know Joshua …