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… has a long-term partnership with the HudsonAlpha Institute for Biotechnology for our Plant Program, and is further … Energy Research Scientific Computing Center (NERSC) and data infrastructure projects—the DOE Systems Biology … (NMDC)—to provide access to datasets, workflows, and tools to seamlessly expand data functionality. Close …

… world’s most harvested crop by tonnage, sugarcane accounts for 80% of global sugar production. A reference genome for … The reference genome of R570 is available on the JGI plant data portal,  Phytozome .   … The work (proposal: … Botany (IEB) was supported by the ERDF project “Plants as a Tool for Sustainable Global Development” No. …

… of the Object-Protocol Model (OPM) data management tools for scientific applications developed at Berkeley Lab. Dr. … S et al. IMG/VR v4: an expanded database of uncultured virus genomes within a framework of extensive functional, …

Researchers at the JGI develop a tool to quickly and accurately identify mobile genetic elements like plasmids and viruses. The Science Mobile genetic elements (MGEs) are … and spread from cell to cell. Two of the most common forms of MGEs are viruses and plasmids. They can be found in …

The IAC is chartered by the JGI Chief Informatics Officer (CIO) and reports to the JGI Director. The … on the effective management and strategic objectives for the JGI’s data science, informatics and information technology (IT) …

… protocols provided by JGI and the JGI user community below for DNA preparation tools, high molecular-weight DNA extraction and RNA … can be found here . DNA Extraction Protocols: … Tips for High Molecular Weight DNA extraction: … RNA Extraction …

… are carbon-fixing microbes and targets of multiple viruses in Earth’s deep subsurface. They are abundant … fresh organic carbon which can serve as a food source for other microbes into the environment. Summary In J. R. R. … identified. The JGI researchers surveyed publicly available data in the JGI’s  IMG/M database , information the Probst …

… sites designed to collect long-term open access ecological data to better understand how U.S. ecosystems are changing.  … Through the  “Facilities Integrating Collaborations for User Science” (FICUS) call between the JGI and the  … State University, which archives and makes available for research over 100,000 samples and specimens of over 60 …

Clarivate Analytics, formerly the IP & Science arm of Thomson Reuters, has … Lead Dan Rokhsar, Molecular Biology & Genetics Staff Data Scientist Asaf Salamov, Plant & Animal Science category … to develop guidelines and best practices for defining virus data quality. Reported in Nature Biotechnology, the …