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Len Pennacchio
In 2003, Dr. Pennacchio joined the DOE Joint Genome Institute and has focused on applying … his Ph.D in 1998 from the Department of Genetics at Stanford University where he uncovered the genetic cause of a … Co-Organizer “Systems Biology of Gene Regulation and Genome Editing,” Cold Spring Harbor Asia 2011-  Board of Directors, …
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A roadmap for research on crassulacean acid metabolism (CAM) to enhance sustainable food and bioenergy production in a hotter, drier world
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Exploring Proteomes of Robust Yarrowia lipolytica Isolates Cultivated in Biomass Hydrolysate Reveals Key Processes Impacting Mixed Sugar Utilization, Lipid Accumulation, and Degradation
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Matt Blow
University University in 2005, where he studied RNA editing and cancer genetics. Dr. Blow carried out … on computational and experimental approaches to study genome regulation in human and other vertebrate genomes. … the lead of the User Support Analysis group. The group performs custom analysis and develops automated pipelines for …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… soil and boosting biofuel feedstocks with less fertilizer. For millions of years, underground fungi have lived in … the April 2024 issue  of  Nature Plants .  “We wanted to better understand the nature of this symbiosis at the … scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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Picking Up Threads of Cotton Genomics
Analysis reveals cotton genome stability across global lineages . Come harvest time, … , both faculty investigators at the HudsonAlpha Institute for Biotechnology. “The goal has been for all this new … reference genomes as a surgeon’s knowledge, and of gene editing as a new tool. In order to know exactly where to use …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… that allows researchers to quickly modify diverse bacterial genomes. In 2019, the JGI’s Yasuo Yoshikuni and his team  … payloads, such as individual genes, whole pathways, genome-editing tools, and reporters.” JGI-developed genetic … used with the model plant  Arabidopsis,  the plants grew better than when they were grown with non-engineered …
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Single Cell Research Group
… material of uncultivated taxa of interest. One such effort is targeted at environmental cells that are from … in the strongly biased representation of sequenced genomes in the public domain, the bulk of which belong to … B.P., Tsiamis G., Sievert S.M., Liu W.T., Eisen J.A., Hallam S.J., Kyrpides N.C., Stepanauskas R., Rubin E.M., …
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A Standardized Synthetic Eucalyptus Transcription Factor and Promoter Panel for Re-engineering Secondary Cell Wall Regulation in Biomass and Bioenergy Crops
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … improvements to switchgrass through more targeted genome editing techniques to customize the crop for additional end … plantings, and then trying to leverage these discoveries to better understand how plants tolerate stresses and …
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An Integrated Dataset to Understand Ecosystem Interaction
Research yields a comprehensive tree and soil dataset for understanding the dynamic relationship between poplar … trees and their microbial partners. The Science To help better understand how ecosystems work and how healthy they … were provided by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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Fungal Friends or Foes in Plant Roots
… plant host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots … health and diversity, which can in turn boost yields for both food and for candidate bioenergy feedstock crops. Summary A plant is like an office …
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