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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… — ‘What are they doing? How do they interact?’” said senior author Francis Martin, a Research Director Emeritus at the … Auer, a research engineer at INRAE and one of the first authors of this work.  To compare these trophic guilds, this …
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Natural Prodcast Episode 7: Ben Shen
… different people have different numbers, but in general, an authoritative number for total number of natural products of … these natural products. So this gives you approximately a 6% successful drug discovery rate.   And this is 100 times … so-called golden age of antibiotic discovery in the 50s and 60s. And, from which, the majority of antibiotics was …
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The Expanding Universe of Methane Metabolisms in Archaea
… available metagenome data provided by the other study co-authors, and reconstructed from these 10 … to Korarchaeota Drs. Luke McKay and William Inskeep are co-authors on the Borrel et al. study described above, and also … on only one korarchaeotal representative,” said first author McKay. “Now we’re adding two more: one ( Candidatus …
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JGI Announces 2023 Community Science Program Awardees
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… publicly available for the research community,” says lead author Serina Robinson, a postdoctoral fellow at the ETH …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… et al, APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2004, 1253–1262, 70:3 ALISON TAKEMURA: And so did you succeed in finding … Biotechnology . 2020 Nov 9. doi: 10.1038/s41587-020-0718-6) The GEM catalog expands the bacterial and archaeal orders … reviews of genome mining: Ziemert, Alanjary, and Weber’s 2016 overview of genome mining (open access) The Challis/Corre …
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A Collaboration to Improve Plant Genome Annotations Across Species
Manager Sarah Sharman recently interviewed study first author Avinash Sreedasyam, a HudsonAlpha senior scientist, … targets for plant improvement. Surprisingly, about 16 to 56 percent of plant genes are poorly characterized, meaning …
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JGI Hosts GPU Hackathon in May
WHEN: May 6-10, 2019 WHERE: JGI With DOE investments in graphical … are due March 1, 2019 for the JGI hackathon, set for May 6-10, 2019, in Walnut Creek, Calif.  Click here and scroll …
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
Synthesis Science Head] Yasuo [Yoshikuni] gave back in 2016.” Alper’s first approved JGI proposal came through the …
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Crysten Blaby-Haas
… 2012 – 2015  Bright Futures Academic Scholarship, 2002 – 2006  HCA Foundation Scholarship, 2002 & 2004  Graduate Student … light on microbial dark proteins. Nature Rev Micro 22, 63. Davidi L, Gallaher SD, Ben-David E, Purvine SO, Fillmore TL, Nicora CD, Craig RJ, …
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Honey Bee Gut Microbiota Divvy Up Dinner
… these bacterial groups. But why the strain variability? The authors think the reason may be that … enzymes themselves. One other finding that interested the authors was that an evolutionary analysis of  … often lack the ability to break down hemicellulose. The authors think this might have to do with the differences in …
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JGI Scientists Pen Genome Watch Articles
… by its genomes and metagenome , rather than just by 16S ribosomal RNA gene censuses.  Emiley Eloe-Fadrosh ,  … a model eukaryote. The wide array of topics comes from the authors’ interests, says Woyke. Their themes just need to … should be hot off the press. She tells prospective authors, “’Once you find a paper that you really like or are …
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