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IMG/M: a data management and analysis system for metagenomes
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Applying Viral Genomics Expertise to Understanding the Human Virome
… and around Earth outnumber the stars in the Milky Way, viruses outnumber the microbes by at least another order of … the regulation of global nutrient cycles. The JGI’s latest strategic plan (download a copy  here ) describes how … center for the HVP ," is related to developing an organizational hub for the program, to organize and manage …
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A Community Resource for Secondary Metabolite Researchers
… The Secondary Metabolism Collaboratory encourages user engagement. The Science In addition to the core set of … produced by groups of genes known as biosynthetic gene clusters (BGCs.) As reported in the recent Database issue of … and contig sources.  The Impact Secondary metabolites are useful in a variety of fields including biotechnology, …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… viridis), a small model grass with a short lifecycle that uses a carbon fixation process known as the C4 pathway, … C4 crops, as are the candidate biofuel feedstocks Miscanthus and switchgrass.  Innumerable road trips and hundreds of … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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How To Use Our Systems
… One of the JGI’s key assets is our user community, comprising a broad range of researchers and trainees who use JGI resources and expertise. These collaborations have yielded numerous, high-quality outputs, such as data, publications and …
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Genome organization and botanical diversity
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Data Ecosystem
… partnerships to offer new capabilities and resources to users through a BER data ecosystem.  A data ecosystem is a connected resource where data from different organizations is discoverable and accessible. Linking the … and help unravel these complexities  This ecosystem serves users better in the following ways: Data integration is …
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IMG/M: the integrated metagenome data management and comparative analysis system
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MetaHCR: a web-enabled metagenome data management system for hydrocarbon resources
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Simon Roux
… the development of novel computational tools to identify virus sequences, the design of new experimental approaches to link viruses to their host(s), collaboration with JGI users for analyzing viral datasets, and the organization of community-building efforts in the field of …
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Nick Everson
… Lab Automation, and Administration departments. He previously served as JGI’s Business Manager from 2007 to 2012, overseeing all financial … Prior to his tenure with Berkeley Lab, he served in the US Navy for 6 years as a submarine electrician and a … and planning related to the JGI’s infrastructure and business functions. He acts as a resource and provides advice …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… the summer of 2014 has grown to a total of 75 with the inclusion of the 2023 cohort. Each of them has brought … their perspectives and views” helped her further develop management and supporting skills for the students. Being … impact of a meeting he had with former JGI Director Eddy Rubin. “That one meeting honestly kind of changed a lot of …
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