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I-Min (Amy) Chen
… her Ph.D. in Computer Science. Her research has been focused on semantic and object-oriented data modeling, and biological data management. She was one of the co-authors and key developers … S et al. IMG/VR v4: an expanded database of uncultured virus genomes within a framework of extensive functional, …
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Simon Roux
… the development of novel computational tools to identify virus sequences, the design of new experimental approaches to … with JGI users for analyzing viral datasets, and the organization of community-building efforts in the field of … 12, 3076. Roux et al., 2018. Minimum Information about an Uncultivated Virus Genome (MIUViG). Nature …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… and around Earth outnumber the stars in the Milky Way, viruses outnumber the microbes by at least another order of … the regulation of global nutrient cycles. The JGI’s latest strategic plan (download a copy  here ) describes how … center for the HVP ," is related to developing an organizational hub for the program, to organize and manage …
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MetaHCR: a web-enabled metagenome data management system for hydrocarbon resources
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IMG/M: the integrated metagenome data management and comparative analysis system
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Expression of macromolecular organic nitrogen degrading enzymes identifies potential mediators of soil organic N availability to an annual grass
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A One-Stop Shop for Analyzing Algal Genomes
… an interactive browser that allows algal scientists and enthusiasts to look deep into more than 100 algal genomes, … journal. The genome portal reinforces the JGI’s new strategic focus on exploring algal biology, diversity, and … to see their favorite alga’s predicted genes and their organization, and analyze genes in the nucleus and …
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Telomere Organization in the Ligninolytic Basidiomycete Pleurotus ostreatus▿ †
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A Genome-Wide Survey of Switchgrass Genome Structure and Organization
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Multiple whole-genome alignments without a reference organism
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Sequencing Submission Requirements for DNA Synthesis
Create an Annotated GenBank File There are several easy-to-use open source tools for converting DNA sequence files into … Davis or commercial options include SnapGene . … How To Use ApE To save your ApE file as a Genbank file, simply go … File -> Save As and add the characters “.gb” (no quotes, just .gb) to the end of your file name. …
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Nick Everson
Lab Automation, and Administration departments. He previously served as JGI’s Business Manager from 2007 to 2012, … contacts, participating national laboratories, and other organizations with regard to JGI administrative and … Lab in this UC-wide staff advocacy group … Education … About the JGI Deputy Director of Operations … Awards and …
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