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Secreted Effector Proteins of the Poplar Leaf Spot and Stem Canker Pathogen Sphaerulina musiva Manipulate Plant Immunity and Contribute to Virulence in Diverse Ways.
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Correlation-based network analysis combined with machine learning techniques highlight the role of the GABA shunt in Brachypodium sylvaticum freezing tolerance
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Genome sequences of key bacterial symbionts of entomopathogenic nematodes: Xenorhabdus cabanillasii DSM17905, Xenorhabdus ehlersii DSM16337, Xenorhabdus japonica DSM16522, Xenorhabdus koppenhoeferii DSM18168, and Xenorhabdus mauleonii DSM17908
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Gut Fungi: Unexpected Source of Novel Chemicals
… . Yet, combing through the genomes of four anaerobic fungal species has revealed, for the first time, that this group is … finnis . In work reported in 2017, the fungal genomes were sequenced by the U.S. Department of Energy (DOE) Joint …
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JGI@25: Building a Better Bean
… of the JGI; and Scott Jackson of the University of Georgia sequenced and analyzed the genome of the common bean. That … farmers and a commercial crop for large producers. The team sequenced and assembled a 473-million basepair genome of the … and researchers across many different labs to be able to sequence a genome.” Since the paper was published in 2014, …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… So, to be able to identify proteins, the team compiled DNA sequences (metagenomes) and messenger RNA sequences (transcriptomes) from their soil samples. This … because, unlike bacteria, they often carry interrupting sequences, called introns. Introns are like having extra …
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JGI Contributes Nine to 2022 Highly Cited Researchers List
… Nikos Kyrpides  and Simon Roux — features 600 genome sequences for Actinobacteria.  Woyke  was also one of three … .  ID’ing RNA viruses with ease : Searching for RNA sequences within a database can be like combing for the … pipeline that scans specifically for RNA virus sequences, initially using it to comb through more than …
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Virus Discoveries that Keep Getting Bigger
… Sequence-based studies — from metagenomics to single-cell … of these approaches. One way of detecting giant viruses in sequence data is read-mapping: using giant virus reference …
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JGI Announces FY26 Large Scale Portfolio for Our Community Science Program
… Chen, Jay Chen, Maureen Coleman and Hugh Cross; [Below] Zac Freedman, Martin Jonikas, Lotus Lofgren, Fumito Maruyama, … the research consortium aims to generate over a terabase of sequence. “We are thrilled to support this year’s CSP …
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Triggering Morel Fruiting
… M. importuna CCBAS932 from the forests of France, were sequenced and annotated by a collaborative team. The genome sequences and annotations are available on JGI’s fungal …
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Ian Blaby
… with a view to developing a deeper understanding of sequence-based gene function. … tool for targeted and genome-scale gRNA design and sequence extraction for prokaryotes and eukaryotes. …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… mentor Bryce Foster, Benchmarking Bioinformatics Tools for Sequence Similarity Searching Morgan Lavenstein Bendall and …
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