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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who was recently selected as the …
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Access to Rock Star Scientists
… Through the JGI-UC Merced Genomics Internship, graduate students Candace Cole, Mo Kaze, Akshay Paropkari, Vicente Ramirez and …
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UC Merced Interns Reflect on Their JGI Summer Projects
… Over the course of eight weeks this past summer, 10 students from UC Merced worked closely with JGI scientists on research projects that contribute to the larger mission of the U.S. Department … Intern: Sidharth Babu (undergraduate) Mentor: Zhong Wang Click the image …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… Puerto Nuevo is a small town along the Baja California coastline in Mexico. While conducting early …
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Rex Malmstrom
… Dr. Malmstrom is a Staff Scientist and leader of the Microscale Applications group. Before … Ph.D. in Marine Biology/Biochemistry, University of Delaware BA in Biology, Boston University ( magna cum laude ) … Serrano et al. 2024.  Spatial co-transcriptomics reveals …
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Fungus Fuels Tree Growth
… Researchers start pinning down how a fungal symbiont spurs growth of poplar, a potential … in order to get  M. elongata and  I. europaea  genomes sequenced and annotated for this study. The team found that, … This work was supported by the Plant-Microbe Interfaces program at the …
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Tracing the Evolution of Shiitake Mushrooms
… the diversity of white rot fungi in the genus Lentinula   The Science Shiitake mushrooms get their name from the … mushroom genomes, and assembling genomes from 60 existing sequences, this work expands the family tree for Lentinula. … as well as atmospheric carbon dioxide.  Summary Researchers sequenced 11 samples from Asia–Australasia and 13 samples …
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Fungal Friends or Foes in Plant Roots
… Uncovering associations between plant roots and fungi that can help or … from natural Arabidopsis populations around Europe. The JGI sequenced and annotated 41 fungal isolates from the collection. The team then compared this dataset against nearly 80 previously published fungal genomes on the JGI …
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Building Sphagnum Genomic Resources
… Sphagnome data would enable researchers’ insights on their potential … terrestrial carbon is stored in peatlands, which make up nearly 3 percent of the earth’s land surface. In the New … The work conducted by the U.S. Department of Energy Joint Genome Institute is supported by the …
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Six join FICUS program in 2026
… The JGI is excited to welcome six to the Facilities Integrating Collaborations for User Facilities (FICUS) program for fiscal …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… New studies show methanogenesis is not exclusively for Euryarchaeota. Atmospheric levels of methane, a potent greenhouse … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility located at Lawrence … Infographic on the importance of methane-cycling microbes for the …
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JGI Earth Month: Kjiersten Fagnan Reflects on Shelter-in-Place Effects
… In   April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25.  On March 17, … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence …
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