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… Trained on environmental data, a new JGI tool more accurately … community able to not just analyze but also create DNA sequences mimicking an array of microbial life. By … is capable of discovering and modelling complex biological sequences such as biosynthetic gene cluster structures. …

… Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems …

… Harnessing BER-funded data resources, researchers built an interactive and comprehensive database of fermentative … the genomes and predict the metabolic abilities of these microbes. The Impact This study illustrates how the research … by the United States Department of Agriculture National Institute of Food and Agriculture grant 2018-67015-27495, …

… The Science The humble lichen is a superorganism: one being that is actually comprised of two (or more) participants. One is a fungus (usually belonging to the ascomycetes, one of the two main branches of … nitrocellulose filters in Petri dishes. The scientists also sequenced the fungus and photobiont’s genomes and compared …

… Select interns look back on meaningful lessons from their summer experiences at the JGI … people in my group and my mentor looked over and was like, “why are you explaining phylogeny to people who have been …

… The Facilities Integrating Collaborations for User Science (FICUS) initiative was established in 2014 to encourage and enable … review by JGI staff as well as staff at the other participating facilities, who consider technical feasibility and readiness to begin work.  During scientific peer review, …

… The joint Critical Minerals and Materials call represents a unique opportunity … to request the capabilities and expertise of both the Joint Genome Institute and the Molecular Foundry in one research … review by JGI staff as well as staff at the other participating facilities, who consider technical feasibility and …

… An article summarizing the field of viral metagenomics, authored by JGI … Nayfach and  Nikos Kyrpides , was  recently published in the journal  Annual Review of Biomedical Data Science . … hydrothermal vents – and computationally identifying which sequences represent viruses that were present in the sample. …

… Interns contributed to a number of projects, from refining lab protocols at the bench to applying artificial … and Identification of Mitochondrial Plasmids from DNA Sequence Moitrish Majumdar Mentors: Bikash Shrestha, Crysten …

… Machine learning methods were applied on sequenced fungal … through the 1000 Fungal Genomes Project, including 55 newly-sequenced species.  The Impact The class  Dothideomycetes … The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, …

… The Facilities Integrating Collaborations for User Science (FICUS) call represents … and expertise of multiple DOE National User Facilities in one research proposal.  Successful applications will … Proposals for the annual FICUS call with EMSL begin with a Letter of Intent (LOI) from a researcher, briefly …

… For many scientists, the culmination of their work into a written report that is … the most efficient at making proteins likely factors into why fungi have been so evolutionary and ecologically … applications, Wint also developed and tested a gene sequence-based predictor of gene expression levels using …