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How Filamentous Fungi Sense Food
… Tracing gene regulatory networks in the model fungus  Neurospora crassa . The Science A team led by researchers at the University of California, Berkeley used a multi-omics approach to … We acknowledge the use of deletion strains generated by Grant P01 GM-068087 …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… Puerto Nuevo is a small town along the Baja California coastline in Mexico. While conducting early field studies related to her thesis on cone snails, UC … of mostly anecdotal information,” Ul-Hasan noted. “I spent a good portion of 2016 and all of 2017 looking for  C. …
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Scaling Up Existing Skill Sets
… Over the course of the summer, the JGI-UC Merced Genomics Internship paired six UC Merced students with seven JGI researchers for bioinformatics internship opportunities in fields … with the JGI had on your plans to pursue a STEM career? I aspire to pursue a career in research and JGI has been the …
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The JGI announces 2024 awardees for our Community Science Program annual call
… From left to right: [above] Olivia Ahern, Adriana Corales, Hugh … “It’s exciting to see the diverse portfolio of successful CSP proposals this year,” noted Tanja Woyke, who heads JGI’s … and I look forward to seeing their outcomes.” The annual CSP call is focused on large-scale genomic science projects …
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JGI Contributes Eight to 2023 Highly Cited Researchers list
… Congratulations to the 2023 Highly Cited Researchers from the JGI recognized for their “significant influence in … elements based upon their gene content and their genetic sequences. Roux was first author on a study featuring a new … Jeremy Schmutz’s 2023 published work included investigating sphagnum moss and the role the plant’s sex plays in its …
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JGI announces 2025 Functional Genomics awardees
… [ Pictured from left: [Above] Hao Chen, Matthew Cope-Arguello, Theophilus Olufemi Isimikalu, Todd H. Oakley, BJ Philmus and Aaron M. … genomic information into biological function. Through our  CSP Functional Genomics call , we look for projects that will …
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Tanja Woyke Awarded van Niel International Prize for Studies in Bacterial Systematics
… who has been awarded the van Niel International Prize for Studies in Bacterial Systematics for the triennium 2017-2020! Established by the University of Queensland in 1986, the van Niel Prize recognizes …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … of rumen-digested switchgrass, researchers isolated and sequenced DNA from rumen microbes involved in the digestion … environment and transfer that ability into industry, specifically to generate biofuels,” Hess said.  (Only 90 of …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… Understanding the shared genetic toolkit of ancestral and present-day plants The Science In a recent  … by liverwort are also seen in flowering plants, or angiosperms, suggesting they are evolutionarily conserved across … framework provided by these high quality reference genome sequences could help researchers better understand related …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who was recently selected as the …
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JGI Announces 2025 New Investigator Portfolio
… Pictured from left: [Top] Bill J. Baker, Jeff Barrick, Ian Gilman, Louis … Reich, Taniya RoyChowdhury and Mar Schmidt; [bottom] Cody Spiegel, James Tan, Emma Timmins-Schiffman, Andressa M. … of biofuel-producing fungi, the effects of biochar on rhizosphere microbiomes, and the metabolic pathways of algae. …
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You Can Move, But You Can’t Hide
… at the JGI develop a tool to quickly and accurately identify mobile genetic elements like plasmids and viruses. The … are genetic entities that seek to replicate themselves and spread from cell to cell. Two of the most common forms of … MGEs based upon their gene content and their genetic sequences. The software was created by researchers under the …
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