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Fungus Fuels Tree Growth
… enjoys a dual lifestyle; it can thrive in the soil as a saprophyte, living off decaying organic matter, or as an … samples of poplar and soil from Washington and Oregon. The cuttings included genotypes from the DOE BioEnergy Science … in order to get  M. elongata and  I. europaea  genomes sequenced and annotated for this study. The team found that, …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… shows that microbes have the capacity to metabolize the same chemicals conifers use for defending themselves, which … 1000km section of the Rocky Mountains. This represents the first study of this nature.  The phyllosphere is a major … summer project in the JGI-UC Merced Internship Program. In 2023, Shayna Bennett, a UC Merced graduate student in …
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Tanja Woyke
… postdoctoral research at the DOE Joint Genome Institute in 2004. The main object of her research was the symbiont … metagenomics. Taking on a Research Scientist position in 2007, she switched gears from metagenomics to single-cell … into the Microbial Genomics Program Lead position in 2009 and assumed the Deputy Director of User Program …
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Understanding Wildfire Recovery, Starting in Soil
… a multi-institutional team of researchers collected soil samples from a wildfire that burned at the Colorado-Wyoming border, about a year after the fire. They sampled soil across a variety of conditions: unburned, low, … builds on the pyrophilous fungi the JGI has previously sequenced , and provides a powerful snapshot of what soils …
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Promoting the Power of Viral Metagenomics
… Microbiome Data Science Group led by Kyrpides. Since early 2020, people all over the world have been forced to confront … viruses is by sequencing the bulk DNA or RNA contained in a sample that has been collected from any kind of environment … hydrothermal vents – and computationally identifying which sequences represent viruses that were present in the sample. …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… different campuses with this being our largest and most successful one. It’s proven to be a really good model for us … be a part of it all. Among them was Travis Lawrence , the first graduate student intern from the 2014 cohort. After … to pass along my knowledge to them as best as possible in a safe environment” This not only helped her be successful as …
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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
… of field research sites designed to collect long-term open access ecological data to better understand how U.S. … archives and makes available for research over 100,000 samples and specimens of over 60 different types of NEON … more about BioSANS. Letters of Intent are due March 17, 2021 for the FICUS proposal call. Q&A from the Webinar: …
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The Megadata of Lake Mendota - Part 1: Many, Many Mers
… of Wisconsin, Madison. And Trina McMahon's lab has been sampling the microbes of that lake for over 20 years, to understand how the freshwater ecosystem works.  …
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Styling for Safety: PPE, It’s the JGI Way
… the minimal PPE requirements when actively working include safety glasses, lab coats, gloves, long pants that cover … these requirements and remind our colleagues to do the same. Check out our JGI trendsetters below to see examples …
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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
… On February 17, 2021, JGI and the Environmental Molecular Sciences Laboratory (EMSL) co-hosted a JGI Engagement: Accessing Resources at Multiple DOE User Facilities with a Single Proposal webinar, inviting researchers to apply for access to …
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A User-Centered Approach to Accessing JGI Data
… launched last year, it was only accessible through the plant portal  Phytozome . Now the portal offers a way for users to more easily access public data sets through a common set of metadata. For … files that are submitted by each scientific program,” he said. “If each kingdom submits the same category of data …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
…   focused on a class within  Chloroflexota called  Dehalococcoidia . Some  Dehalococcoidia have a knack for degrading the kind of harmful … Researchers found a number of surprising traits in  Dehalococcoidia inhabiting hot springs. Some of those traits … The work (proposal:  https://doi.org/10.46936/10.25585/60000691 , and  …
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