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How Filamentous Fungi Sense Food
Tracing gene regulatory networks in the model fungus  Neurospora crassa . The Science A team … are available; this information triggers pathways to determine which enzymes should be deployed in what order to most …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
Puerto Nuevo is a small town along the Baja California coastline in Mexico. While conducting early field studies related to her thesis on cone …
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What Happens Underground Influences Global Nutrient Cycles
… 2020 collaborative FICUS projects. Through the Facilities Integrating Collaborations for User Science (FICUS) program, two … Inter-organismal interactions. Algal research features prominently among the eleven proposals selected with four …
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You Can Move, But You Can’t Hide
… forms of MGEs are viruses and plasmids. They can be found in virtually all of Earth’s ecosystems. A software tool  … MGEs based upon their gene content and their genetic sequences. The software was created by researchers under the … more insights into Earth’s ecosystems, researchers must examine the interactions that happen between tiny organisms …
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The JGI announces 2024 awardees for our Community Science Program annual call
… our 2024 Community Science Program Annual Call. “It’s exciting to see the diverse portfolio of successful CSP proposals … relevant to the DOE’s mission, and I look forward to seeing their outcomes.” The annual CSP call is focused on … of Biological and Environmental Research (BER) missions in: sustainable biofuel and bioproducts production, global …
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Katherine Louie
Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 became Platform Lead where she manages metabolomics …
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Tanja Woyke Awarded van Niel International Prize for Studies in Bacterial Systematics
… to Tanja Woyke, who has been awarded the van Niel International Prize for Studies in Bacterial Systematics for the triennium 2017-2020! Established by the University of Queensland in 1986, the van Niel Prize recognizes contribution of …
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Streamlining Regulon Identification in Bacteria
RIViT-seq technology could speed up associating transcription factors with their target genes. The … that can be turned on or off by the same regulatory protein. Researchers demonstrated the efficacy and potential of … the 5’-ends by 5’-end sequencing, from which those promoter sequences recognized by a given sigma factor are inferred. …
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JGI Announces 2025 New Investigator Portfolio
Ian Gilman, Louis Graf, Yuxi Guo, Shaomei He, Vayu Hill- Maini, Forrest Lefler, Pok Man (Bob) Leung and Huang Li; … and Mar Schmidt; [bottom] Cody Spiegel, James Tan, Emma Timmins-Schiffman, Andressa M. Venturini, Valentin Waschulin, Flavia Winck Vischi, Jennifer …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who was … Microbiology (ASM). Roux leads the Viral Genomics group within the JGI Metagenome Program, and coordinates the …
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Gut Fungi: Unexpected Source of Novel Chemicals
Fungi from herbivore poop make surprisingly complex compounds — an energetically expensive feat … too costly for them. The Science Anaerobic fungi, which die in the presence of oxygen, dwell in herbivore guts and help … finnis . In work reported in 2017, the fungal genomes were sequenced by the U.S. Department of Energy (DOE) Joint …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… have contributed to the research of 13 JGI scientists since the program’s inception. In 2014, JGI’s Zhong Wang and Science Programs Deputy Axel …
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