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When “The Blob” Made It Hotter Under the Water
… samples. Genomic DNA extracted from the water samples were sequenced by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley … This work was performed under the auspices of the Scientific Committee on Oceanographic Research …
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FICUS Overview
… and capabilities of multiple Department of Energy Office of Science National User Facilities into their research. …
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JGI-TMF Critical Minerals and Materials Call
… reach out to Christa Pennacchio, Project Management Office. Direct any questions about the proposal call to JGI …
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Computationally Classifying Fungal Lifestyles
… Machine learning methods were applied on sequenced fungal genomes to classify gene families. The … through the 1000 Fungal Genomes Project, including 55 newly-sequenced species.  The Impact The class  Dothideomycetes … of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley …
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Cataloging the Microbes that Manage the Health of River Systems
… program at Pacific Northwest National Laboratory. The JGI sequenced over 1,000 metagenomes and established … supported by awards from US Department of Energy (DOE) Office of Science, Office of Biological and Environmental Research (BER) grants …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley … Amplification to generate enough DNA to put on a sequencer. As previously mentioned, it’s a method that’s … assembly. So while researchers are confident all the DNA sequences came from one cell, including components like …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… the most efficient at making proteins likely factors into why fungi have been so evolutionary and ecologically … applications, Wint also developed and tested a gene sequence-based predictor of gene expression levels using …
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FICUS
… reach out to Christa Pennacchio, Project Management Office. For questions about the appropriateness of projects or …
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Nigel Mouncey
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JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
… by the annual  HPCwire Readers’ and Editors’ Choice Awards . NERSC, JGI, ESnet are U.S. Department of Energy Office of Science user facilities. The HPCwire Editors Choice … carbon cycling, and the microbial dynamics in freshwater lakes over a several year period.” “We’ve been thrilled to …
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A Complex Confection Decoded: Sugarcane Reference Genome
… of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley … Community Science Program; in 2018, a monoploid reference sequence of sugarcane was published as a step forward in … in R570 but shows the genomic effects of breeding practices that transformed sugarcane into production factories …
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Iron-rich Microbial Mats’ Main Players: Marsarchaeota
… thousands to millions of copies of a particular DNA sequence from just a few pieces of DNA. Summary The extreme … of Energy Joint Genome Institute is supported by the Office of Science of the U.S. Department of Energy under …
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