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… streamlines project management, laboratory information tracking, and enables efficient analysis and reporting of … Mr. Shahab has extensive experience in Laboratory Information Management Systems (LIMS), bioinformatics, and genomics … data management. He has worked at several renowned institutions, developing solutions for large-scale sequencing …

… enabled by the JGI DNA Synthesis Science Program. Fashioning DNA outside a cell is key to interrogating what genes do, how they work, and applying them to environmental and energy challenges. But not all scientists have the expertise and resources to do DNA design …

… potential for engineering bioenergy crops The Science Scientists at Brookhaven National Laboratory (BNL) led a team that  identified a protein … within poplar involved in plant growth, lignin production, and disease resistance.  The Impact With increased … of Energy, Office of Science, Office of Biological and Environmental Research, as part of the Quantitative Plant Science …

… Journal publication caps JGI pilot project with fledgling Florida high school scientists. The Florida Everglades evokes images of fanboats … in the Arthur R. Marshall Loxahatchee National Wildlife Refuge, a 226-square mile area of the northern … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …

… such as mosses could be uniquely powerful in helping scientists link plant genetic sequences to what they do. But sequencing the genome of one short plant — fire moss — had an unexpected …

… DNA genomes that co-infect eukaryotic cells along with giant viruses. Virophages are small viruses with … increased the number of known high quality virophage genome sequences 10-fold through computational approaches. By … they were able to identify 44,221 total virophage partial sequences, including over 28,000 unique MCP sequences.  …

… a microbiome of bacteria, viruses and fungi process carbon and nitrogen, paving the way for future plants and trees … at microbial genomes across a spectrum of burned soils. By connecting microbial genes with functions useful for forest … builds on the pyrophilous fungi the JGI has previously sequenced , and provides a powerful snapshot of what soils …

… and spread from cell to cell. Two of the most common forms of MGEs are viruses and plasmids. They can be found … MGEs based upon their gene content and their genetic sequences. The software was created by researchers under the … genomics of MGEs and their evolution at the cellular level, scientists can better understand ecosystem-wide processes. …

… Jan. 7: New Capabilities to Study Secondary Metabolism   Although there are still a large number … expressing a given BGC in various hosts, availability of sequenced genomes, and computing resources needed to predict BGCs from available genome sequences. The DOE Joint Genome Institute (JGI), a DOE …

… and help them digest their last leafy meal. In their evolutionary history, these fungi branched off early from aerobic … of energy, and because anaerobic fungi can’t harness it, scientists long held that these fungi don’t have the energy … finnis . In work reported in 2017, the fungal genomes were sequenced by the U.S. Department of Energy (DOE) Joint …

… JGI is in the process of shifting its operations from Walnut Creek to the heart of the Berkeley Lab campus. By Friday, October 18, the production sequencing labs in Building 100 were silent. Twenty years … after the JGI united the genomics expertise of three national labs in one long building at Walnut Creek, after …

… In this episode, undergraduates adopt genomes that the JGI sequenced, but never published in the literature. These … State Fresno) and two students, Angela and Mark Soghomonian share what it was like to take on one of these genomes.  …