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… Liu, Building Expression Host in Bacilli Class using CRAGE Technology Emerald Nash and mentor Jonelle Basso, … mentor Bryce Foster, Benchmarking Bioinformatics Tools for Sequence Similarity Searching Morgan Lavenstein Bendall and … and the fact that I got to do a project involving over 12,000 fungal genomes was just really, really exciting for …

… and the University of Wisconsin-Madison collected 40 samples from five oceanic regions to better understand … function in such extreme conditions. They identified 511 new or recently discovered genera of bacteria and … at Lawrence Berkeley National Laboratory, contributed metagenomic sequencing to the study as well as  genome …

… Mini-Metagenomics Approach Helps Identify Novel Archaeal Methane … the microbes into small pools of cells that were then sequenced separately. From these samples, 111 metagenome-assembled genomes (MAGs) were recovered, most …

… challenges.   Usually, plants have the upper hand against any kind of biomass breakdown. They’ve spent … and efficiently harvest the energy they store.      Since 2012, O’Malley has worked with the JGI to understand the … lines for efficiency.  In 2021, her team saw that four strains of anaerobic fungi also, unexpectedly, secrete …

… — which smells terrible —they were able to isolate four strains: Anaeromyces robustus , Caecomyces churrovis , … californiae , and Piromyces finnis . In work reported in 2017, the fungal genomes were sequenced by the U.S. Department of Energy (DOE) Joint … project was supported by a grant from Santa Barbara Cottage Hospital and the University of California, Santa Barbara …

… In the summer of 2015, Adam Session was a postdoc working at the DOE Joint … on a number of plants, including  genomes of cotton lineages and the  oilseed crop false flax – genomes that have been sequenced by the JGI – and the common strawberry, which is …

… falling. As  published online in  Nature Plants  on July 15, researchers have developed multiplexed assays — … networks across evolutionary time and diverse plant lineages. Aligning with U.S. Department of Energy (DOE) … of where those binding sites are in the genome — those sequences are moving around, disappearing and appearing in …

… the full announcement “ Berkeley Lab Receives Multiple 2021 HPCwire Awards ” on the Berkeley Lab Computing Sciences … microbiomes.” JGI’s Chief Informatics Officer  Kjiersten Fagnan touted the long-standing collaboration between JGI and … for the first time with  MetaHipMer , taking advantage of scalable parallel algorithms and GPU acceleration, …

… Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, after … into scalable methods for scientific data analysis. In 2014 Dr. Fagnan became the JGI-NERSC Engagement Lead with a … Kjiersten Fagnan is the JGI's Chief Informatics Officer. Click to learn …

… On July 8, JGI’s DNA Synthesis Science group held a  JGI Engagement: Accessing Functional Genomics Capabilities Webinar … and its applications. “I moved to UC Davis in 2014,” recalled Philipp Zerbe of the University of California, … the researchers will receive a FedEx package with the sequenced, quality controlled population representing the …

… bacteria’s energy sources. More than two billion years ago, cyanobacteria acquired the ability to produce their own … of multicellular organisms. Not all bacterial lineages harnessed aerobic respiration when the Cyanobacteria … to gain and harness energy. As reported January 28, 2019 in Nature Communications , two research teams joined …