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Bacteria and Fungi Divvy Up the Work in Forest Floor
… the complex organic matrix of the forest floor, a team of researchers have found that there is a striking division of … So, to be able to identify proteins, the team compiled DNA sequences (metagenomes) and messenger RNA sequences … more in the leaf litter and soil near the roots. But the deeper down and away from the roots one goes, the more …
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Expanding Virophage Diversity
… in capsid maturation. Recently reported in  Microbiome , researchers from the US Department of Energy (DOE) Joint … increased the number of known high quality virophage genome sequences 10-fold through computational approaches. By … they were able to identify 44,221 total virophage partial sequences, including over 28,000 unique MCP sequences.  …
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JGI Hosts GPU Hackathon in May
… changes in industry/DOE Advanced Scientific Computing Research (ASCR) facilities. It’s a leadership opportunity for …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… A special issue of Synthetic Biology celebrates research enabled by the JGI DNA Synthesis Science Program. … integrative -omics, and data mining, empowering research collaborators to take on ambitious synthetic biology … interrogate the roles that terpenes play in nature. The research collaboration has been incredibly productive; more …
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JGI Workshop at SIMB NP Meeting
… expressing a given BGC in various hosts, availability of sequenced genomes, and computing resources needed to predict BGCs from available genome sequences. The DOE Joint Genome Institute (JGI), a DOE …
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Fungus Fuels Tree Growth
… Researchers start pinning down how a fungal symbiont spurs … in order to get  M. elongata and  I. europaea  genomes sequenced and annotated for this study. The team found that, … plant growth hormones. One other tidbit that caught the researchers’ attention is that the poplar cuttings had …
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Webinar: SIP technologies at EMSL and JGI
… DOE’s Office of Science is the largest supporter of basic research in the physical sciences in the United States, and is …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… around this structure to facilitate sharing.  Recently, researchers have been able to study both sides of this … said Benjamin Cole, senior author of this work. Cole is a research scientist at the U.S. Department of Energy (DOE) … said. She is first author of this paper and a graduate researcher at the Joint BioEnergy Institute (JBEI). Cole led …
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Webinar: Introducing the BioSANS capability
… Sciences Laboratory hosted a webinar to showcase how researchers can gain access to the Biological Small-Angle … from: Scott Lea, EMSL’s Structural Biology Integrated Research Platform lead Hugh O’Neill, from the Center for … DOE’s Office of Science is the largest supporter of basic research in the physical sciences in the United States, and is …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… Jorge Arroyo , director of UC Merced’s Undergraduate Research Opportunity Center, echoed similar sentiments for the … of the summer to “confident in themselves and their research” during their final presentations and beyond. Before … was a 2022 graduate student intern who is now a graduate researcher in Jing Xu’s lab and a teaching assistant for the …
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Decoding Yellowstone’s Microbial Mats
… oxygenating Earth over two billion years ago. A team of researchers set out to Yellowstone National Park to study how …
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JGI Contributes Nine to 2022 Highly Cited Researchers List
… This year’s list features 6,900 researchers working in 21 fields.  Congratulations to the  … Nikos Kyrpides  and Simon Roux — features 600 genome sequences for Actinobacteria.  Woyke  was also one of three … .  ID’ing RNA viruses with ease : Searching for RNA sequences within a database can be like combing for the …
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