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… a DOE Office of Science User Facility. This year, the 12th JGI-UC Merced cohort consisted of three undergraduate … postdoc Yumary Vasquez, was herself a program alum from the 2022 cohort.  The UC Merced interns attended professional … and Identification of Mitochondrial Plasmids from DNA Sequence Moitrish Majumdar Mentors: Bikash Shrestha, Crysten …

… Machine learning methods were applied on sequenced fungal genomes to classify gene families. The … through the 1000 Fungal Genomes Project, including 55 newly-sequenced species.  The Impact The class  Dothideomycetes … (green). (From Haridas S et al.  Studies in Mycology , 2020.) Using whole genome data from newly sequenced genomes, …

… at virus infections. Their genomes include short DNA sequences that code for CRISPR systems, which help bacteria … resist foreign genetic elements by incorporating short sequences from infecting viruses and phages. In these … do so, they compared samples collected from an aquifer in 2012 and 2018 against a biofilm sample collected in 2018. …

… available from all the facilities participating in the FY25 call, introduces the available APS resources, and … The FY23 FICUS Open Call for Proposals describes the resources … available from all the facilities participating in the FY23 call, introduces the Eco-FAB resource, and contains …

… partly enabled by the JGI’s Community Science Program; in 2018, a monoploid reference sequence of sugarcane was published as a step forward in … The work (proposal: https://doi.org/10.46936/10.25585/60001084 and https://doi.org/10.46936/10.25585/60001194) conducted by the USA Department of Energy …

… the IP & Science arm of Thomson Reuters, has released their 2019 list of Highly Cited Researchers , which includes 10 affiliated with the JGI . The 2019 list focused on Highly Cited Papers, defined in the … Nature Genetics, the work is part of a long-term project to sequence, annotate and analyze the genomes of more than 300 …

… efficacy of RIViT-seq, researchers recently characterized 12 sigma factors and were able to identify the associated … assay. The second step consists of RNA sequencing of whole transcriptomes, and the third is determining the 5’-ends by 5’-end sequencing, from which those promoter sequences recognized by a given sigma factor are inferred. …

… Dr. Mouncey joined the DOE Joint Genome Institute in 2017 as the fourth Director in its 27-year history. He has a wealth of managerial experience from almost 20 years in the Industrial Biotechnology private sector, as … AAAS Fellow (2024) Society for Industrial Microbiology and Biotechnology …

… Scientist at Berkeley Lab. Since joining Berkeley Lab in 2008, Dr. Northen has had leadership roles within large … Joint BioEnergy Institute and the ENIGMA SFA project. In 2015, he founded what is now the JGI Metabolomics Program to … V, et al. Reproducible growth of Brachypodium in EcoFAB 2.0 reveals that nitrogen form and starvation modulate root …

… in Complex Systems (LRC) in Menlo Park, Calif. In the June 24, 2022, issue of the journal Science, Volland and colleagues, … the bacterial cells on the molecular level. They amplified, sequenced and assembled the genomes. In parallel, Gros’ lab …

… increased the number of known high quality virophage genome sequences 10-fold through computational approaches. By … virophage marker gene MCP, they were able to identify 44,221 total virophage partial sequences, including over 28,000 unique MCP sequences.  …