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Webinar: Introducing the BioSANS capability
University in St. Louis on “Integrated Multi-omics Analyses for the Prediction of Metabolic Flux in. Lignin Conversion”       … The U.S. … to these challenges.  DOE’s Office of Science is the largest supporter of basic research in the physical sciences …
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Duplications and losses of genes encoding known elements of the stress defence system of the Aspergilli contribute to the evolution of these filamentous fungi but do not directly influence their environmental stress tolerance
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… project to form new connections between fungal guilds, genes and function. If a tree falls in the forest — whether … registers the sound — one thing is for sure: there are lots of fungi around. Within a forest’s soil, hundreds of species … for mapping these RNA reads. “Currently, this is the largest JGI-sequenced fungal metatranscriptome yet,” said …
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Integrating Experimentation with Data
Seattle, Washington.   Topics will include:  environmental microbiomes biodesign and synthetic biology AI/ML-enabled … to stay informed … The JGI and EMSL are U.S. Department of Energy (DOE) Office of Science national scientific user facilities …
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Eelgrass Proves to Be Much Younger Than We Thought
… less than previously believed.  The Science Eelgrass, one of the most abundant plants in the ocean, originated in … 40,000 years. The Impact Eelgrass represents one of the largest carbon sinks in the ocean — occupying just 0.2% of … for all global populations of eelgrass used in the study to reveal colonization events.  Looking ahead, scientists can …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
Puerto Nuevo is a small town along the Baja California coastline in Mexico. … UC Merced graduate student Sabah Ul-Hasan and alumnus of the JGI-UC Merced Genomics Internship Program, first … may be involved in venom activity, which is part of a larger consortium Ul-Hasan has started, known as the …
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The Megadata of Lake Mendota – Part 3: Boating Out to David Buoy
This is the third and final episode of our series on a giant metagenome assembly from … In the last two episodes, we’ve covered the specialized software and supercomputers behind this project. But every part of this project depends on lakewater samples — so this …
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Sulfide Generation by Dominant Halanaerobium Microorganisms in Hydraulically Fractured Shales
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JGI@25: Studying Sorghum’s Survival Skills
In honor of the JGI's 25th anniversary in 2022, we have revisited a … reference genome for Sorghum bicolor . Since then, 2,993 publications, 107 patent applications, and 53 patents have … team collect diverse lines of sorghum to understand what genes exist across the species. Earlier pan-genomes for …
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Kjiersten Fagnan
… bioinformatics computing consultant, after completing a petascale postdoctoral fellowship at NERSC and LBNL’s … closely with staff to understand the data-intensive nature of JGI workloads. Dr. Fagnan was appointed CIO of the JGI in … … About the JGI Chief Informatics Officer … Selected Publications … Awards and Honors …
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Marianne Buscaglia
… in cold marine environments and is interested in analyzing genes that can impact the metabolism of their hosts. …
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Polar Phytoplankton Need Zinc to Cope with the Cold
Antarctic algae need their vitamins; zinc fuels some of their most important functions. Even in the chilly waters … peering into the function and activity of phytoplankton genes and looking at how communities of these microalgae … to these challenges.  DOE’s Office of Science is the largest supporter of basic research in the physical sciences …
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