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JGI Announces FY26 Large Scale Portfolio for Our Community Science Program
… Maureen Coleman and Hugh Cross; [Below] Zac Freedman, Martin Jonikas, Lotus Lofgren, Fumito Maruyama, Lauren Stadler, Tingting Xiang and Sheree Yao. ] ] The JGI welcomed 14 … the research consortium aims to generate over a terabase of sequence. “We are thrilled to support this year’s CSP …
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Finding the Fermenters
… Harnessing BER-funded data resources, researchers built an interactive and comprehensive database of fermentative … The Science Most organisms use oxygen to convert food into energy. However, in environments with little or no … by the United States Department of Agriculture National Institute of Food and Agriculture grant 2018-67015-27495, …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… For the first time in several years, the DOE Joint Genome Institute hosted … mentor Bryce Foster, Benchmarking Bioinformatics Tools for Sequence Similarity Searching Morgan Lavenstein Bendall and … and I never felt that asking dumb questions would like undermine me or anything like that. So I feel really comfortable …
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Cultivating Symbiotic Antarctic Microbes
… cultures reveal they are symbionts and not free-living organisms. The Science Researchers employed multiple … in understanding the genomic basis and ecological consequences of microbe-microbe interactions. Using metagenomes … cannot produce certain essential parts of a cell: amino acids, co-factors, and membrane lipids, suggesting they rely …
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Ian Blaby
… Since 2019 Dr. Blaby heads the Biodesign Platform at the Joint Genome Institute, where he leads three groups focused on … with a view to developing a deeper understanding of sequence-based gene function. … tool for targeted and genome-scale gRNA design and sequence extraction for prokaryotes and eukaryotes. …
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Lessons from Two Design–Build–Test–Learn Cycles of Dodecanol Production in Escherichia coli Aided by Machine Learning
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Dealing with Drought: Uncovering Sorghum’s Secrets
… genes respond to drought stress. The Science Fields of drooping stalks and cracked earth are becoming common images in … conventional food crops. For that reason, its genome was sequenced by the JGI in 2009 and it is considered to be … DOE Office of Biological and Environmental Research to determine what genes respond to drought conditions, and how these …
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Ray Turner Completes Last Tour of Lab Duty at JGI
… last 15 years, Ray Turner has been one constant for the Joint Genome Institute. On July 1, 2020, that all changed. Ray’s vigilant … last 15 years, Ray Turner has been one constant for the Joint Genome Institute. On July 1, 2020, that all changed. … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Introducing New Members of the JGI User Executive Committee
… “you-wren”) of the University of Arizona! They join nine other JGI users already serving on the UEC – go here to view the full roster of members. …
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New and Improved: Eucalyptus Reference is Now Accessible
… An improved genome assembly to support targeted tree breeding for the bioeconomy.   The Science Researchers report a … using advanced technologies to reconstruct the complete sequences of individual chromosomes. The team describes the … hypothesizes the difference might not be due to repeated sequences, but rather the more accurate assembly of regions …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… Trained on environmental data, a new JGI tool more accurately … community able to not just analyze but also create DNA sequences mimicking an array of microbial life. By … is capable of discovering and modelling complex biological sequences such as biosynthetic gene cluster structures. …
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Metabolic Network Analysis and Metatranscriptomics Reveal Auxotrophies and Nutrient Sources of the Cosmopolitan Freshwater Microbial Lineage acI
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