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FICUS Overview
… for User Science (FICUS) initiative was established in 2014 to encourage and enable researchers to more easily integrate the … ranked proposal list, along with a recommendation from management at JGI and the other participating facilities, is … DOE for final approval.  Following DOE approval, project managers negotiate project specifics with PIs (including JGI …
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Boosting Small Molecule Production in Super “Soup”
… keep processes running smoothly. As reported August 26, 2021, in Nature Communications , researchers led by Hal Alper … industry.” From Cell to “Soup” The work started with yeast strains engineered by Alper’s team to convert the sugar … than were noted inside the cell. “One of the huge advantages of the cell-free system is that the cells are no longer …
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JGI-TMF Critical Minerals and Materials Call
… ranked proposal list, along with a recommendation from management at the JGI and the other participating facilities, … DOE for final approval. Following DOE approval, project managers negotiate project specifics with PIs (including JGI … Proposers are encouraged to review the JGI’s sample requirements . Samples that …
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A Complex Confection Decoded: Sugarcane Reference Genome
… Science Considered the world’s most harvested crop by tonnage, sugarcane accounts for 80% of global sugar production. … partly enabled by the JGI’s Community Science Program; in 2018, a monoploid reference sequence of sugarcane was published as a step forward in …
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Iron-rich Microbial Mats’ Main Players: Marsarchaeota
… Novel archaeal lineage found in Yellowstone may have been important in early … have discovered and characterized a novel phylum-level lineage of archaea with at least two major subgroups dubbed … thousands to millions of copies of a particular DNA sequence from just a few pieces of DNA. Summary The extreme …
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10 From JGI on the 2019 Highly Cited Researchers List
… IP & Science arm of Thomson Reuters, has released their 2019 list of Highly Cited Researchers , which includes 10 … appear on the 2019 list. Congratulations to: Project Manager Kerrie Barry, Cross-Field Category Fungal and Algal … Nature Genetics, the work is part of a long-term project to sequence, annotate and analyze the genomes of more than 300 …
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FICUS
… ranked proposal list, along with a recommendation from management at the JGI and the other participating facilities, … DOE for final approval.  Following DOE approval, project managers negotiate project specifics with PIs (including JGI … please reach out to Christa Pennacchio, Project Management Office. For questions about the appropriateness of …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… in Complex Systems (LRC) in Menlo Park, Calif. In the June 24, 2022, issue of the journal Science, Volland and colleagues, including researchers at the JGI and Berkeley Lab, … the bacterial cells on the molecular level. They amplified, sequenced and assembled the genomes. In parallel, Gros’ lab …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… So, to be able to identify proteins, the team compiled DNA sequences (metagenomes) and messenger RNA sequences (transcriptomes) from … reference fungal genome sequences assembled as part of its 1000 Fungal Genomes Project . To map microbial activity, … Integrating Collaborations for User Science (FICUS; #49499) program and used resources at the DOE Joint Genome …
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Expanding Virophage Diversity
… Virophages are small viruses with double-stranded DNA genomes that … increased the number of known high quality virophage genome sequences 10-fold through computational approaches. By mining more than 14,000 publicly available metagenomic datasets in JGI’s  … Virophage data on IMG/M data portal …
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An Enzyme System to Help Catalyze Bioproduction of Plastic
… National Synchrotron Light Source II (NSLS-II). Leveraging resources from user facilities funded by the … innovation ecosystem. “At JGI, we’ve done the synthesis, metagenome mining, all the way from sequencing to functional … isolate it. The JGI provided a range of constructs based on sequences for MAR enzymes from different organisms to …
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JGI Workshop at SIMB NP Meeting
… expressing a given BGC in various hosts, availability of sequenced genomes, and computing resources needed to predict BGCs from available genome sequences. The DOE Joint Genome Institute (JGI), a DOE …
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