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A Collaboration to Improve Plant Genome Annotations Across Species
… To provide broad plant genomic capabilities, the DOE Joint Genome … which specializes in genome improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led … Schmutz is the Plant Program Lead at the JGI. Sarah:  Why is a resource like this important to the field of plant …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… In the summer of 2015, Adam Session was a postdoc working at the DOE Joint Genome … and the  oilseed crop false flax – genomes that have been sequenced by the JGI – and the common strawberry, which is …
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JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
… This is excerpted from the full announcement “ Berkeley Lab Receives Multiple 2021 HPCwire … Choice Awards . NERSC, JGI, ESnet are U.S. Department of Energy Office of Science user facilities. The HPCwire Editors … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what … With metagenomic sequencing, researchers have found more of these viruses than ever before, in all kinds of ecosystems. However, matching these viral genetic sequences to their hosts is crucial to understanding what …
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Kjiersten Fagnan
… Kjiersten Fagnan began working with JGI in 2012 as a NERSC … closely with staff to understand the data-intensive nature of JGI workloads. Dr. Fagnan was appointed CIO of the JGI in 2016, and in 2018 was hired to be the JGI’s … Kjiersten Fagnan is the JGI's Chief Informatics Officer. Click to learn more about how the JGI supports the …
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
… On July 8, JGI’s DNA Synthesis Science group held a  JGI Engagement: Accessing … really fully exist back then,” said Hal Alper, a University of Texas at Austin professor, “but we really first heard … the researchers will receive a FedEx package with the sequenced, quality controlled population representing the …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers … genome data, unlocking new potential for AI-driven studies of energy metabolism. The Science Researchers produced … time. They also discovered more than 6,000 mitochondrial sequences previously unrecognized within existing public …
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Waiting to Respire
… Genomes from uncultivated bacteria offers clues to ancestral bacteria’s energy … own food and generate oxygen as a byproduct. The abundance of oxygen shaped the evolution of life on Earth, and led to … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… A new view into a symbiosis could offer benefits to address … change: pulling atmospheric carbon into soil and boosting biofuel feedstocks with less fertilizer. For millions of … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the … of binning methods, we were able to recover Olpidium sequences from the “contaminated” genome data with strong … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… P. psychrophila genes drive resilience when salinity fluctuates. The … ice in the Arctic has decreased by more than 30% in terms of quantity and thickness. Replacing older, thicker ice with … surface where algae grow. Armed with a better understanding of the alga’s stress resistance and ability to adapt to …
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Graduate Students Get Thesis Research Opportunity at the JGI
… Twice a year, the DOE Office of Science Graduate Student Research … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility located at Lawrence Berkeley …
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