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The JGI Data Portal: Improving User Experience
… The human-centered, agile collaboration between the JGI and the information technology company Truss has resulted in the JGI Data Portal , a pilot … only accessible via Phytozome, the improvements it encompasses are more broadly applicable to the download … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… several UC Merced students this past summer. This year’s cohort for the JGI-UC Merced Internship Program was brimming … as they came onsite. From data carpentry to science communications, their schedules were filled with trainings … And we’ve been working on isolating and cultivating and sequencing extremophile protists from a hypersaline alkaline …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… Duisburg-Essen (UDE), Germany with the aim of intensifying collaborations in the fields of genomics, structural … the research programs and user facilities at Berkeley Lab. Commenting on the visit, JGI Director Nigel Mouncey expressed enthusiasm about the potential of this collaboration stating, “We already identified a lot of …
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JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
… Receives Multiple 2021 HPCwire Awards ” on the Berkeley Lab Computing Sciences site. Lawrence Berkeley National … (Berkeley Lab), the National Energy Research Scientific Computing Center (NERSC), the DOE Joint Genome Institute … (JGI), and the Energy Sciences Network (ESnet) have been recognized for outstanding achievements in science, …
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Waiting to Respire
… harnessed aerobic respiration when the Cyanobacteria did; contemporaries Melainabacteria and Sericytochromatia, … and harness energy. As reported January 28, 2019 in Nature Communications , two research teams joined forces and data … from the bacterial tree before Cyanobacteria and its contemporaries. Margulisbacteria were named for Lynn …
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A User-Centered Approach to Accessing JGI Data
… for users to more easily access public data sets through a common set of metadata. For Steve Wilson, JGI’s Systems … within groups, such as plants (via Phytozome) or fungi ( MycoCosm ). “We have made a concerted effort to create a common … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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Pinning Down a Piece of Photosynthesis
… how these ocean photosynthesizers cycle carbon in changing conditions. The products of photosynthesis are easy to point … to pin down.  Photosynthesis appears to have a lot in common with a Rube Goldberg machine: surprising dependencies, intricate connections, and many, many moving parts. A lot of these …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… JGI tool more accurately facilitates microbial genome discoveries. Unlocking the intricate details of life’s genetic … generative model  now available to the global research community able to not just analyze but also create DNA … for cutting-edge genomic research — and is capable of discovering and modelling complex biological sequences such as …
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Graduate Students Get Thesis Research Opportunity at the JGI
… at 12 host national laboratories or facilities between 3-12 consecutive months. Their proposed research projects address … of the latest SCGSR award is Mo Kaze, part of the 2018 cohort of the JGI-UC Merced Genomics Internship Program. … at the UC Merced School of Natural Sciences. “I’m deeply concerned about climate change and this is a remarkable …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… located at Lawrence Berkeley National Laboratory, have collaborated with global researchers on projects related to … cycles. The JGI’s latest strategic plan (download a copy  here ) describes how understanding these nutrient cycles can help researchers contribute toward developing the bioeconomy. Now, JGI …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple applications. The planet’s … For more than a decade, researchers around the world have collaborated with the U.S. Department of Energy (DOE) Joint …
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An Earth Month Look at Sustainability Efforts at the JGI
… and environmental challenges. And many JGIers work to connect those big goals with their everyday activities, … well as offices. These efforts dovetail into sustainability commitments for the wider Berkeley Lab. “We’re shifting now … and performing services,” Fulton said. These emissions come from the whole lifecycle of materials used — from their …
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