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Gut Fungi: Unexpected Source of Novel Chemicals
… The Science Anaerobic fungi, which die in the presence of oxygen, dwell in herbivore guts and help them digest … meal. In their evolutionary history, these fungi branched off early from aerobic fungi, which can breathe oxygen — … — which smells terrible —they were able to isolate four strains: Anaeromyces robustus , Caecomyces churrovis , …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… crop and ornamental seeds sold for the upper Midwest are often very different than those bred for Texas. Identifying … sites. “This paper is a combination of really cutting-edge genomics and genetic analysis with large scale data collection,” he added. Jeremy …
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JGI Workshops at PAG
… Jan. 12 workshop: The Rapidly Expanding Genomics of Algae   With advances in genomics technologies, keen interest in the bioenergy and …
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Kjiersten Fagnan
… and evolved into scalable methods for scientific data analysis. In 2014 Dr. Fagnan became the JGI-NERSC Engagement … closely with staff to understand the data-intensive nature of JGI workloads. Dr. Fagnan was appointed CIO of the JGI in 2016, and in 2018 was hired to be the JGI’s …
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Nigel Mouncey
… the fourth Director in its 27-year history. He has a wealth of managerial experience from almost 20 years in the … focused on the discovery, development and commercialization of novel production organisms and fermentation processes for … on secondary metabolites. He is also on the Leadership Team of the National Microbiome Data Collaborative and served as …
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SIPs with Standards
… and even how quickly. But there's a catch: SIP labwork and analysis can be very demanding.  The JGI offers SIP analysis to make these experiments accessible to more …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… 2023 marked a decade since the inception of the flagship internship program between the DOE Joint Genome Institute (JGI) and University of California (UC), Merced. What started with 2 interns in … alumni, and other staff gathered at the Integrative Genomics Building, the JGI’s home at Berkeley Lab, as …
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Programs & Platform Leads
… genome science capabilities to support BER's mission of achieving a predictive understanding of complex biological, earth, and environmental systems for … JGI researchers drive innovations that cross the boundaries of the Plant, Fungal, Algal, Microbial, Metagenome, …
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Introducing New Members of the JGI User Executive Committee
… serving on the UEC – go here to view the full roster of members. Each of the researchers had their own reasons … aims to help overcome common user bottlenecks in access, analysis and sharing of JGI-generated data. She is also … review procedures and the organization of the JGI Annual Genomics of Energy & Meeting. Any investigator who has been …
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JGI@25: Strengthening Soybean
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … U.S. Not only does it pair with maize, the dominant source of bioethanol, in crop rotation, but soybean ( Glycine max ) …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… UC Merced graduate student Sabah Ul-Hasan and alumnus of the JGI-UC Merced Genomics Internship Program, first sampled the area in … today. I didn’t know anything about Principal Component Analysis (PCAs) when I first started, and overall found …
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Mining Metagenomes for Cas Proteins
… characterized at UC Berkeley and the Innovative Genomics Institute.  The Science Researchers report the discovery of miniature Clustered Regularly Interspaced Short … proteins and were also found next to cas1 genes. Further analysis led to the identification of a new family of Cas …
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