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Graduate Students Get Thesis Research Opportunity at the JGI
… Twice a year, the DOE Office of Science Graduate Student Research … result of the latest call , a total of 70 graduate students from 52 universities were selected to carry out part of … lab at the UC Merced School of Natural Sciences. “I’m deeply concerned about climate change and this is a …
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The JGI Data Portal: Improving User Experience
… The human-centered, agile collaboration between the JGI and the … JGI Data Portal , a pilot download experience accessible from JGI’s plant portal Phytozome . Although the Data Portal … are more broadly applicable to the download processes from the other JGI Portals, as well. “For thousands of …
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SIPs with Standards
… Stable Isotope Probing (SIP) is a powerful technique for studying microbial communities. These experiments can show which microbes …
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Computationally Classifying Fungal Lifestyles
… Machine learning methods were applied on sequenced fungal … class  Dothideomycetes includes fungi that obtain nutrients from decaying organic matter (saprobes), and many plant … predicting plant pathogens (blue) vs saprobes (green). (From Haridas S et al.  Studies in Mycology , 2020.) Using …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… Sequencing technology has changed dramatically over the last  25-plus years since … users — have access to high-quality, assembled datasets from all of this information. The JGI aims to create … has been a collaborative effort. For example, with support from the  Exascale Computing Project , the JGI — along with …
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DOE Metrics
… FY 2026 DOE Metrics Sequencing Quarter Total Bases (Trillions) Operating Hours Goal  Actual Total*   … Hours reflect a delay in implementation of the LIMS from Q2 to Q3. As a result of the delay in the LIMS …
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UC Merced Interns Reflect on Their JGI Summer Projects
… Over the course of eight weeks this past summer, 10 students from UC Merced worked closely with … The topics students worked on ranged far and wide — from implementing new data visualization tools, to using … Intern: Sidharth Babu (undergraduate) Mentor: Zhong Wang Click the image …
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A Community Resource for Secondary Metabolite Researchers
… The Secondary Metabolism Collaboratory encourages user engagement. The … it is the largest repository of BGC sequence data from over 1.3 million publicly available bacterial and … gene clusters and secondary metabolites information from isolate and metagenome data.   The SMC ( …
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Tracking the Origins of Methane-Producing Microbes
… Mini-Metagenomics Approach Helps Identify Novel Archaeal Methane … user facility, report the discovery of a novel archaeum from a hot spring that has the genetic machinery to perform … small pools of cells that were then sequenced separately. From these samples, 111 metagenome-assembled genomes (MAGs) …
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A Mentor’s Perspective on Training the Next Generation
… Over the years, hundreds of interns have come to the JGI from all parts of the globe to gain lab …
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Better Crops With a Pointillist Approach to Plant Genomics
… In this episode, we peer into plant cells. Researchers are using measurements from single cells to understand which genes help plants …
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Back in the Lab: the 2023 Summer Intern Experience
… This summer marked the first fully in-person internship experience in several years for students and researchers alike at the JGI. With … work, but the opportunity to collaborate with and learn from fellow researchers onsite as well. …
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