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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… across 90 species. “One unique thing about this work was our focus on all the kingdoms, including animals, plants, … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Berkeley Lab. In addition to … found that these enzymes have evolved distinctly from both core and specialized enzymes. Even during …
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JGI Hosts GPU Hackathon in May
… processing unit (GPU)-based high-performance computing resources, an upcoming hackathon led by the Oak Ridge … (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, aims to explore applications in the life … and the code owners will be able to get assistance from mentors and a team to port their code to a new …
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JGI@25: Using Team Science to Build Communities Around Data
… revisited a number of notable achievements that showcase our collaborations and capabilities to enable great science … these initial efforts: Spatafora and Jason Stajich from UC Riverside would focus on broad sampling of early … genomes in progress and 200 that are pending samples from users. Roughly 300 have been published. Spatafora said the …
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Evolution of a Fungal Gene Expression Regulator
Impact Interactions between plants and fungi run the gamut from mutually beneficial to antagonistic. In fungi, 5mC is … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, and others like it, are uncovering the true … no. DE-AC02-05CH11231. The Georgia Advanced Computing Resource Center (GACRC) and Georgia Genomics and Bioinformatics …
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Protocols
Find protocols provided by JGI and the JGI user community below for DNA preparation tools, high …
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Cultivating Symbiotic Antarctic Microbes
… interactions. Using metagenomes recovered directly from environmental samples and cultivated microbes, … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, experimentally demonstrated that … host dependency of Antarctic Nanohaloarchaeota   … From our partners …
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Partners
… with the HudsonAlpha Institute for Biotechnology for our Plant Program, and is further leveraging the services of the Arizona Genomics Institute for DNA and RNA … expand data functionality. Close partnerships with other user facilities enable the ability to leverage their …
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Uncovering Novel Genomes from Earth’s Microbiomes
… repository of 52,515 microbial draft genomes generated from environmental samples around the world, expanding the … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … Path for Metagenomics Researchers Building upon these resources, KBase, a multi-institutional collaborative knowledge …
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mSphere of Influence: the View from the Microbiologists of the Future
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
But not all scientists have the expertise and resources to do DNA design and synthesis work. This is where … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … fostering academia-industry collaborations.” A third story from the issue — Machine learning-based prediction of …
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2025 NeLLi Symposium
… researchers to discover novel lineages of life and move from the identification of microbial novelty to assigning … on venue and lodging.  … Once you have completed your meeting registration you will receive a link to submit … of Life Lead Tanja Woyke , Microbial Program Gitta Szabo , User Project Coordination Rekha Seshadri, Functional …
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Doubling Down on Known Protein Families
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … ‘Dark Matter’ Microbial communities living everywhere from soils and stomachs to the deep sea are capable of doing … diversity has doubled, but in reality it could be three or four or five or tenfold more out there.” Digging Further into …
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