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Overview of Laboratory Workflows for Microbial Single-Cell Genomics
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Six join FICUS program in 2026
… six to the Facilities Integrating Collaborations for User Facilities (FICUS) program for fiscal year 2026, in … Molecular Sciences Laboratory (EMSL) and other national user facilities. Focus areas for these projects include … research exploiting a diversity of capabilities to generate datasets beyond what each facility could generate …
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Environmental Genomics Group
… Our research focuses on the assembly of metagenomic sequence data into microbial genomes, which is of fundamental value … of hard-to-culture microorganisms. This process enables our users to explore the genetic makeup of microbial … of thousands of metagenomic datasets, to enable our users to identify patterns and trends across different …
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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
… a JGI Engagement: Accessing Resources at Multiple DOE User Facilities with a Single Proposal webinar, inviting … here about the “Facilities Integrating Collaborations for User Science” (FICUS) program. Letters of Intent are due … We work with start-ups and mature companies, as long as the data are not proprietary. In addition, the JGI has a …
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Genomes OnLine Database (GOLD) v.8: overview and updates
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … Neighbor (KNN) Classification. LDA is a supervised data compression technique that was used to take the complex, high-dimensional data (the 136 tetranucleotide frequencies for each of the …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… support so that they can deliver these programs to our students.”   Following this, several … program committee members including JGI Deputy of Science Programs and Internship co-founder Axel Visel and UC Merced …
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The JGI announces 2024 awardees for our Community Science Program annual call
… proposals this year,” noted Tanja Woyke, who heads JGI’s User Programs. “These PIs have proposed research that addresses …
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Identifying genomic data use with the Data Citation Explorer
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JGI Welcomes New UEC Members
… The JGI User Executive Committee (UEC) represents the JGI user community and is responsible for providing input and advice on JGI policies and practices that affect users and their access to …
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A More Intuitive Phytozome Interface
… the latest interactive version of the JGI’s plant data portal. On August 6, 2021,  version 12 of Phytozome … been under active development for over 5 years, provides users with the genome browsers, gene pages, search, BLAST … backend data systems. Trying to maintain v12’s codebase and legacy data resources and hardware, while also developing a …
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The JGI announces FY25 awardees for our Community Science Program Annual Call
… investigators,” said Tanja Woyke, Deputy Director of JGI’s User Programs. “Many of these projects are large in scale and …
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