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How Filamentous Fungi Sense Food
… array of simple and complex components present in plant biomass. This is of interest for bioenergy researchers … in what order to most efficiently degrade the plant biomass. In order to learn more about these regulatory … carbon sources, which ranged from simple sugars to plant biomass. One of these techniques was DAP-seq, a …
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JGI Early Career Researchers Featured in mSystems Special Issue
In a special issue of mSystems , out May 14, 2019, JGI researchers are among the authors who offer … article, Micro-Scale Applications head Rex Malmstrom and Metagenome Program head Emiley Eloe-Fadrosh outline more … beyond the tried-and-true method of traditional shotgun metagenomics. One approach uses fluorescence-activated cell …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… by combining a study of microbial communities (metagenomics) and a chemical labelling approach. The Impact … a targeted technique called virusFISH. Using fluorescently tagged probes, the team was able to visualize the behavior … within the Census of Deep Life Sequencing call 2018, phase 14 project “Development of novel archaeal viruses and the …
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Natural Prodcast Episode 3: The Primer, Part 3
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John Vogel
Dr. Vogel joined JGI in 2014 to establish a plant functional genomics program. Prior … lines in an effort to create improved varieties for biomass production. He did his postdoctoral studies at the … Brachypodium. Genetics, 223 (2), art. no. iyac146 DOI: 10.1093/genetics/iyac146 Gordon, et. al. 2020 …
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iPHoP: A Matchmaker for Phages and their Hosts
… these hosts are microbes like bacteria, not humans. With metagenomic sequencing, researchers have found more of these … such as terrestrial soil, having additional isolates and metagenomic datasets will strengthen future virus-host …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… do they adapt by changing what macromolecules are in their biomass, because that affects the quality of the food of … in how general environmental stressors, um, alter microbial biomass and then what the consequences are for the …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… of stable, synthetic microbial communities to take advantage of their joint metabolisms. Because, together, microbes …
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Building Sphagnum Genomic Resources
… and the University of Vienna  reported recovering draft metagenome-assembled genomes for seven novel species of … the JGI (CSP 605), the German Research Foundation (DFG, PE 2147/1-1), the European Union (FP7-People-2013-CIG, Grant No PCIG14-GA-2013-630188 and Marie Skłodowska-Curie Grant No …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… the low maintenance, it can produce an impressive amount of biomass which could then be converted into sustainable … been working on identifying switchgrass genes related to biomass production, drought tolerance, and other traits that … growing by the side of the road become a key player in biomass-based fuels.   … P. virgatum on Phytozome … Plant …
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Tanja Woyke Elected to American Academy of Microbiology
… at the University of California, Merced. Woyke received a 2014 Berkeley Lab Director’s Award for Exceptional Scientific … State University. Luis Larrondo, who spoke at the JGI’s 14th Annual Genomics of Energy & Environment Meeting, as …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… and climate resilience of algae — for potential use as biomass or in biomass conversion to biofuel. Summary Water temperatures …
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