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The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification
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Natural Prodcast Episode 9: Roger Linington
… back for episode 9 of Natural Prodcast. This week, Alison and I talk to Roger Linington, from Simon Fraser … and doing medicinal chemistry, doing development of projects on a project-by-project basis. And the more time … us, we want to hear from you! We have projects in genome sequencing, DNA synthesis, transcriptomics, metabolomics, …
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The genome of Syntrophomonas wolfei: new insights into syntrophic metabolism and biohydrogen production
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Natural Prodcast Episode 15: Katherine Duncan
… … Dan Udwary: Hey, Alison Takemura: Hey, Dan. Dan Udwary: Today we’re going to talk … before– or kind of around about when the first genome sequencing was done. But natural products– marine natural … of North America. So then I came back and I worked on an EU project, the Scottish Association for Marine Science. And …
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Natural Prodcast Episode 20: Brian Bachmann
… … DAN UDWARY: Hey everyone and welcome back to a new session of Natural Prodcast. … which was a very early genome mining company, back when DNA sequencing of natural product pathways was hard and … we also worked in DIANs. We worked on that. We had separate projects with John Thorson and Ben Shen. [Listen here to Ben …
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IMG Group
The IMG group owns and maintains integral components of JGI’s production workflow, and is responsible for the annotation and … Genomes (IMG) data management system … As part of this project, pairwise average nucleotide identities (ANI) and …
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Computationally Classifying Fungal Lifestyles
Machine learning methods were applied on sequenced fungal genomes to classify gene families. The … data generated in part through the 1000 Fungal Genomes Project, including 55 newly-sequenced species.  The Impact … supported by the NSF grants  DEB-1354625 and  IOS-1456958 . Sequencing of  Dothideomycetes genomes were conducted as …
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New Research Sheds Light on Diversity in the Deep Sea
Microbial communities living near hydrothermal deep-sea vents hold … array of microorganisms adapted to living in extreme conditions. At these vents, and underwater volcanoes,  … Berkeley National Laboratory, contributed metagenomic sequencing to the study as well as  genome analysis, …
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JGI Announces 2023 Community Science Program Awardees
Congratulations to the proposers of the 19 proposals selected … CSP Annual Call is focused on large-scale genomic science projects relevant to the DOE’s Office of Biological and … inter-organismal interactions, understanding natural communities important for carbon storage, nutrient cycling, …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
Accepted proposals emphasize JGI interests in algae and secondary metabolites. A total of 27 proposals have been  … through the  CSP New Investigator call . It is the first project to have successfully evolved into a full-scale … Wisconsin Institute for Discovery (WID) are interested in sequencing secondary metabolite-producing environmental …
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Natural Prodcast Episode 5: Brad Moore
Prodcast,” a podcast about the science and scientists of secondary metabolism.  Brad Moore, UC San Diego and Scripps … in his science. And he was working with some really cool projects at that time. So I was pretty stoked to be able to … Bill Fenical. And we connected to JGI through the Community Sequencing Program, and they worked with us to sequence two …
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Effects of Polar Light Cycle on Microbial Food Web
Populations of Antarctic lake microbial communities change with the seasons. The Science … over a 10-year period and sent to JGI for metagenomic sequencing. A study  recently published in  Microbiome shows … (DP150100244) and the Australian Antarctic Science program (project 4031). The work conducted by the US Department of …
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