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RegPrecise web services interface: programmatic access to the transcriptional regulatory interactions in bacteria reconstructed by comparative genomics
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NAP: The Network Analysis Profiler, a web tool for easier topological analysis and comparison of medium-scale biological networks
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Nikos Kyrpides
… Program and the development of the comparative analysis platforms for microbial genomes and metagenomes (IMG). He became the … National Laboratory. Dr. Kyrpides’ research focus on Microbiome Research with an emphasis on Microbiome Data … . 39(5):578-585. Nayfach S, et al. (2021) A genomic catalog of Earth’s microbiomes. Nature Biotechnol . …
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Microbiome Engineering: Synthetic Biology of Plant-Associated Microbiomes in Sustainable Agriculture
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Natural Prodcast Episode 15: Katherine Duncan
… I think it must’ve been about 2001, maybe, and so it was before smartphones and before laptops and everything. And I … a subset of molecules that will fly on an analytical instrument and be detected. Dan Udwary: You’re making me so … sometimes you can find something that you know, a constellation that you can know. And that’s a chemical that you …
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Protocols
… protocols provided by JGI and the JGI user community below for DNA preparation tools, high molecular-weight DNA … Tips for High Molecular Weight DNA extraction: …
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FICUS
… The Facilities Integrating Collaborations for User Science (FICUS) call represents a unique opportunity for researchers to request the capabilities and expertise of … or be otherwise mission-aligned, but proof of concept for the demonstration of a technology that would be …
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User Support
… work and outline roles and responsibilities resulting in a formal Statement of Work (SOW). All work performed at the JGI is initiated via the Work Initiation … orientation to JGI systems to Investigators Preparation of formal Statement of Work (project roadmap) Users must …
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Partnerships: Myco-Ed
… The Mycological Curriculum for Education and Discovery  (Myco-Ed) is a Course-Based … techniques and data analyses compile original data for improving fungal genomic resources empower students … goes into iNaturalist. Myco-Ed has:  ~50 lineages selected for sequencing 16 genomes released 20 members from 15 …
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Doubling Down on Known Protein Families
… crafted the Novel Metagenome Protein Families (NMPF) Catalog.  “We can now analyze new datasets by comparing … unique makeup of microbe players and the functions they perform, artificially replicating a whole community is … with 8 billion metagenome genes from IMG (the study also references data from the JGI’s  Genomes from Earth’s …
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Nigel Mouncey
… genetics that started with his education and carried forward into his roles as a senior research scientist at … of novel production organisms and fermentation processes for vitamins, insecticides, fungicides, platform chemicals, … He is also on the Leadership Team of the National Microbiome Data Collaborative and served as President of the …
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The emergence of microbiome centres
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