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Waiting to Respire
… Genomes from uncultivated bacteria offers clues to ancestral … led to the development of multicellular organisms. Not all bacterial lineages harnessed aerobic respiration when the … Facility, and research scientist Frederik Schulz in Woyke’s Single Cells group had generated and analyzed single …
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MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities
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Genomes of Three Methylotrophs from a Single Niche Reveal the Genetic and Metabolic Divergence of the Methylophilaceae
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… 824 new GEBA-Actino genome sequences were combined with nearly 5,000 publicly available ones and 1,100 … sequence fragments can lead to high-quality yet incomplete genome sequences which could bias the analyses. … resource, but also yielding and supporting many high-impact publications ,” emphasized Markus Göker, who managed the …
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Tanja Woyke Awarded van Niel International Prize for Studies in Bacterial Systematics
… awarded the van Niel International Prize for Studies in Bacterial Systematics for the triennium 2017-2020! … in, on and around the planet–through techniques including single-cell genomics and metagenomics. They cited her “landmark” 2013 Nature paper , which uncovered nearly 30 major previously uncharted branches of the tree of …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… thinner ice means more fresh water — and less salt — near the surface where algae grow. Armed with a better … Biology article highlights how one microalga collected from water on the ice surface handles such fluctuations. P. … significant signs of recovery through increased nutrient uptake and decreased cell death.  Scientists then extracted …
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The Power of One, Amplified
… conducting large-scale single cell genomics by collecting nearly 500 single cells from a single low diversity hot spring sediment sample. … that were missed within paired metagenome assembled genomes (MAGs), and that dominant populations varied with … Facility, is supported under Contract No. DE-AC02-05CH11231. This work was supported in part by a Natural Sciences …
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Isolation and sequencing of a single copy of an introgressed chromosome from a complex genome for gene and SNP identification
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JGI Contributes Nine to 2022 Highly Cited Researchers List
… Congratulations to the  2022 Highly Cited Researchers from the JGI recognized for their “significant influence in their chosen field or fields through the publication of multiple highly cited papers during the last … the JGI is sequencing thousands of bacterial and archaeal genomes from diverse branches of the Tree of Life.  Its …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… Bacterial enzymes play second fiddle to those from fungi when it comes to breaking down tough plant … to identify proteins, the team compiled DNA sequences (metagenomes) and messenger RNA sequences (transcriptomes) from … by fungi is happening much more in the leaf litter and soil near the roots. But the deeper down and away from the roots …
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Rex Malmstrom
… and carbon consumption of SAR11 bacteria, the most abundant bacterial group in the ocean. Later during his postdoctoral … the Microscale Applications group to operate a similar single-cell genomics pipeline that provides JGI users access to the genomes of uncultured microbes.  His group also handles the …
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Laminarin stimulates single cell rates of sulfate reduction whereas oxygen inhibits transcriptomic activity in coastal marine sediment
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