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… DNA sequences to aid with genome assembly and transcriptome analysis of microbial, fungal, and plant research projects.  … applied to DNA methylation analysis as well as improving metagenome assemblies. Q&A from the Webinar: Input & … sequenced without pooling, which yields ~ 180 Gb of data per library. Q: How much DNA/coverage is required for …

… researchers searching for sequences of RNA viruses in large data sets, their work may be akin to finding a single … viral diversity. “Although the technical challenges of data analysis at this scale are formidable.” Computational Sieves … available metatranscriptome datasets from the JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) system. …

… Jonathan’s email request reached  Emiley Eloe-Fadrosh , the Metagenome Program Head at the  U.S. Department of Energy … The class was also able to receive training for the JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) portal … and organic carbon concentration. From Field Studies to Publication Together as a class, the students learned about …

… The DOE has been similarly invested in environmental management, contributing to bioremediation efforts for … , they were able to analyze the resulting metagenomic data. (Data from the project are available on the  JGI … to the cleanup by continuing to access the JGI’s  Integrated Microbial Genomes and Microbiomes (IMG/M) system. …

… more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence … in developing a secondary metabolites portal within the Integrated Microbial Genomes and Microbiomes (IMG/M) system … and secondary metabolites information from isolate and metagenome data.   The SMC ( smc.jgi.doe.gov ) is designed …

… Pacific Ocean, or in the bay, and be able to do chemical analysis, as well as transcript analysis. And what we’re … before you see toxin. And we have some preliminary data with other samples that we do see days to a week of a … the end of last year. Dan: So these are going to be seaweed metagenomes? You’re sequencing everything? Brad: Metagenomes …

… technology company Truss has resulted in the JGI Data Portal , a pilot download experience accessible from … areas of focus and data and computational needs. Over its 23-year history, JGI has produced more than 13 petabytes of … work on IMG and GOLD,” said Steve Wilson, head of the JGI’s Systems Engineering Group. “Our team’s ultimate goal is to …

… types, in which DNA-based molecules can be chromosomally integrated into a taxonomically diverse suite of microbial …

… and the tools to compare them are available on the JGI’s Integrated Microbial Genomes & Microbiomes ( IMG/M ) portal. … with nearly 5,000 publicly available ones and 1,100 metagenome-assembled genomes (MAGs) reconstructed from … resource, but also yielding and supporting many high-impact publications ,” emphasized Markus Göker, who managed the …

… project by watching Amanda Hurley’s presentation from the 2019 JGI Genomics of Energy & Environment Meeting.] He’s … to unpack experimentally. But there’s a couple of different systems where people have made strides in that area. Where I … for a company. Personally, that was my first taste of big data if you want, maybe it’s medium data now. But at the …