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Natural Prodcast Episode 16: Marcy Balunas
… DAN: Hey Marcy!  ALISON: Hey Marcy?  MARCY: Hello. How’s it going?  … And we’ve done some work with those and have a couple of publications out there on the chemistry. There’s so much … massive problems just as much as it brings about massive data into really interesting ways to look at our systems. …
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IMG/VR v.2.0: an integrated data management and analysis system for cultivated and environmental viral genomes
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IMG/M: integrated genome and metagenome comparative data analysis system
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Mining Metagenomes for Cas Proteins
… Cas14 proteins discovered from JGI’s IMG/M database and biochemically characterized at UC Berkeley and … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of … the the Lawrence Berkeley National Laboratory’s Sustainable Systems Scientific Focus Area is funded by the U.S. …
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JGI Advisory Committee
… The JGI Advisory Committee (JAC) is convened by the JGI Director to … Institute’s strategic, scientific, technical, informatics, management, and operational objectives. Serving as JGI’s …
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MetaHCR: a web-enabled metagenome data management system for hydrocarbon resources
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Programs & Platform Leads
… As an Integrative Genome Science User Facility, the JGI plays a leadership role in … of complex biological, earth, and environmental systems for energy and infrastructure security. In … draw from the infrastructure of Genomic Technologies and Data Science & Informatics. The JGI also sustains a vibrant …
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DOE Metrics
… FY 2026 DOE Metrics Sequencing Quarter Total Bases (Trillions) Operating … capabilities to analyze complex genomic or metagenomic datasets. [Download PDF] Q3 – Report on new computational … Q2 is due to planned upgrade of the Laboratory Information Management System (LIMS) and temporary shut down of the …
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Silver age of GOLD introduces new features
… The JGI’s Genomes OnLine Database celebrates 25 years as a vital resource … including the Integrated Microbial Genomes & Microbiomes (IMG/M) system, enhancing genome annotations and promoting … a broad range of activities from proposal intake to publication. Information is also obtained and cross-checked …
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A Sorghum Pangenome Opens More Doors to Discovery
… Leveraging decades of technological development, dozens of reference genomes and thousands of … with resequencing of 1,984 cultivars and landraces, these data capture the diversity of this crop across geographic … Development (USAID) also supported the work.   Publication:  Morris, G.P., Harder, A.M., Healey, A.L.  et …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… DAN: All right. Welcome back to Natural Prodcast. I did it. I’m keeping to my … them are actinobacteria. And so we get a lot of them from databases of organisms, so things like the NRL database - or … unknown. And so we've done the sequence similallity network analysis where we look for other receptors with sequence …
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A User-Centered Approach to Accessing JGI Data
… it was only accessible through the plant portal  Phytozome . Now the portal offers a way for users to more easily … through a kingdom portal (assemblies + annotations) For IMG & Mycocosm: Data that is associated with an ITS project … requires that users know about the FY Funding Year, and the publication status in addition to the public/private status. …
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