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Toward a Standards-Compliant Genomic and Metagenomic Publication Record
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A tale of two codes
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Analyze Data
… can empower the global research community.   We have two key priorities:  The JGI is involved in efforts to integrate data in support of new research questions that span domains. We also work with our partners to build infrastructure in support of new analysis techniques.  Notice Data Portal files will …
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Improving the Cacao Genome and Phytozome
… fungal infections. That’s why Mars, Inc., a maker of chocolate for more than 100 years and one of the world’s … will be cocoa for chocolate tomorrow In 2010, a draft first genome of  Theobroma cacao  – the tree that produces cacao … released by a Mars, Inc.-led consortium through the Cacao Genome Database project. The genome sequence was assembled …
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Webinar: MycoCosm Tutorial
… data portal , an interactive collection of sequenced fungal genomes, omics data and comparative analysis tools. … While are still working on finalizing the tree and related publication the tree is still in development and not available for download. 9.  Q: Can I upload my own sequences? A: We can add external annotated fungal genomes, …
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Team Science Reveals Important Protein in Poplar
… Described as the “DOE Tree,” poplar is considered one of the  Flagship Plants for the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … bioenergy feedstock crops. The trees can be bred to be more resistant to environmental stresses such as nutrient-poor …
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Picking Up Threads of Cotton Genomics
… Analysis reveals cotton genome stability across global lineages . Come harvest time, … growing on plants, with fluffy white bolls bursting out of the green pods in every direction. There are 100 million … Science “The results described in this  Nature Genetics publication will facilitate deeper understanding of cotton …
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QTL associated with resistance to cassava brown streak and cassava mosaic diseases in a bi-parental cross of two Tanzanian farmer varieties, Namikonga and Albert
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Community Science Program
… synthesis, and metabolomics at the JGI for projects of relevance to Department of Energy (DOE)  Mission Areas . Through this program, the DOE aims to advance genome science-based scientific research from a broad range … more customized analysis, the JGI also participates in publication of results. See more details on our Review …
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Intraspecific comparison and annotation of two complete mitochondrial genome sequences from the plant pathogenic fungus Mycosphaerella graminicola
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JGI Contributes Nine to 2022 Highly Cited Researchers List
… influence in their chosen field or fields through the publication of multiple highly cited papers during the last … the JGI is sequencing thousands of bacterial and archaeal genomes from diverse branches of the Tree of Life.  Its … Nikos Kyrpides  and Simon Roux — features 600 genome sequences for Actinobacteria.  Woyke  was also one of three …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring polar bears in winter … Information, and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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