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Natural Prodcast Episode 21: Elizabeth Parkinson
… little bit of your background because you do-- you're classically trained as a synthetic chemist. BETSY PARKINSON: Yes. … exposure to working with Streptomyces, learning more about genome mining, as well as isolation and a little bit of … them are actinobacteria. And so we get a lot of them from databases of organisms, so things like the NRL database - or …
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Integrating Experimentation with Data
…   Registration for this meeting has closed           Registration fees:     … $250     Industry: $700    Thanks for joining the Joint Genome Institute (JGI) and the Environmental Molecular … Automated Laboratories: Integrating Experimentation with Data” was held at the Seattle Marriott Waterfront in …
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A Community Resource for Secondary Metabolite Researchers
… more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence … over 1.3 million publicly available bacterial and archaeal genome and contig sources.  The Impact Secondary metabolites … the most comprehensive BGC database available at 10X the scale of the closest comparable database, and has the …
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Len Pennacchio
… In 2003, Dr. Pennacchio joined the DOE Joint Genome Institute and has focused … his Ph.D in 1998 from the Department of Genetics at Stanford University where he uncovered the genetic cause of a … Len Pennacchio is the JGI's Deputy of Genomic Technologies. oClick …
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Webinar: MycoCosm Tutorial
… data portal , an interactive collection of sequenced fungal genomes, omics data and comparative analysis tools. … While are still working on finalizing the tree and related publication the tree is still in development and not … and letters of support you can communicate the scale of community interest in the data that you would like …
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An Automated Tool for Assessing Virus Data Quality
… can help researchers assess virus sequence fragments and data quality. The Science Through advances in sequencing … recovered and identified from environmental samples (metagenomes). However, the quality and completeness of … (Berkeley Lab), has developed a command-line tool called CheckV that can automatically do both. The work was …
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Webinar: PhycoCosm Tutorial
… Learn more about JGI’s  PhycoCosm data portal , an interactive collection of sequenced algal genomes, omics data and comparative analysis tools. … two calls for proposals are open right now – large scale CSP and FICUS with March 24 and March 17 deadlines. … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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The JGI announces 2024 awardees for our Community Science Program annual call
… JGI is excited to announce the fifteen scientists selected for our 2024 Community Science Program Annual Call. “It’s exciting to see the diverse portfolio of … their outcomes.” The annual CSP call is focused on large-scale genomic science projects relevant to the DOE’s Office …
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Four chromosome scale genomes and a pan-genome annotation to accelerate pecan tree breeding
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Improving the Cacao Genome and Phytozome
… infections. That’s why Mars, Inc., a maker of chocolate for more than 100 years and one of the world’s largest … will be cocoa for chocolate tomorrow In 2010, a draft first genome of  Theobroma cacao  – the tree that produces cacao … by a Mars, Inc.-led consortium through the Cacao Genome Database project. The genome sequence was assembled by the …
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Plant Microbial Interactions Group
… Plants are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and … and are influenced by microbial partners. We use a variety of genomics-powered tools to study this complexity, … experimental characterization methods, in addition to bioinformatics tools to elucidate phage function in this …
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Finding the Fermenters
… Harnessing BER-funded data resources, researchers built an interactive and … had found other ways to produce energy, using a process called fermentation. To better understand the range of … including the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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