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A Community Resource for Secondary Metabolite Researchers
… more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence … metabolites portal within the Integrated Microbial Genomes and Microbiomes (IMG/M) system known as IMG-ABC. … the most comprehensive BGC database available at 10X the scale of the closest comparable database, and has the …
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Natural Prodcast Episode 9: Roger Linington
… DAN: Welcome back for episode 9 of Natural Prodcast. This … his time between Bill Gerwick’s lab and doing research in Panama through support from the ICBG training program, which … is likely to be in the environment? Can we use this broad-scale view of the chemistry in order to start to make …
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Dan Rokhsar
… Dr. Rokhsar joined the JGI in 2000 as the founding Associate Director … the sequencing, annotation, and analysis of three human chromosomes. After successful completion of the Human Genome … and evolutionary analysis of over fifty plant and animal genomes. He currently leads the JGI’s Computational Genomics …
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The Case for Conservation
… How sex chromosomes “older than dinosaurs” could help improve crop … heavy metal contamination, and drought. The moss genomes’ metabolic pathways could lead to the discovery of … comprise a full third of each moss genome, and are almost four times the size of the next largest chromosome. As the …
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Jane Grimwood Named HudsonAlpha Genomics Chair
… was named a Yellowhammer Woman of Impact.     Notable large-scale multi-institutional JGI projects and resulting publications that Grimwood contributed to include: A 2021 … ago.   As well as the seminal Human Genome Project DOE Chromosome publications: The DNA sequence and biology of …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … labs had people and resources focused on three human chromosomes: Lawrence Berkeley National Laboratory … with the HudsonAlpha Institute for Biotechnology.   Publications Grimwood, J., Gordon, L., Olsen, A. et al. The …
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Uncovering Novel Genomes from Earth’s Microbiomes
… Large-scale comparative analysis leads to identification of … methods in the past decade, researchers have uncovered genomes for just a small fraction of Earth’s microbial … generated from environmental samples around the world, expanding the known diversity of bacteria and archaea by 44%, …
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Representing sex chromosomes in genome assemblies
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Four Researchers Join JGI User Executive Committee
… Four researchers have been elected to the User Executive Committee of … The JGI provides advanced genomic capabilities, large-scale AI-ready data and expertise to the global research … science. Bik and her research group are regular participants of the JGI annual user meeting and New Lineages of …
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Webinars on Offerings & Capabilities
… Below are a list of webinars that can help you through the submission process by … here . You can find additional webinars covering how to use our data portals here.  …
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A Collaboration to Improve Plant Genome Annotations Across Species
… To provide broad plant genomic capabilities, the DOE Joint Genome … evidence across species. Centralized databases with large-scale transcriptome projects such as Expression Atlas and … Avinash:   JGI puts huge efforts into generating reference genomes for new species allowing it to fill gaps in the …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… Large-scale comparative analysis leads to identification of … Repertoire in Actinobacteria Over the years more than 3,400 genomes have been sequenced from curated DSMZ isolates, for … resource, but also yielding and supporting many high-impact publications ,” emphasized Markus Göker, who managed the …
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