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… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science and scientists of secondary metabolism.  Brad Moore, UC San Diego and … Natural Products conference, which took place last January 2020 in San Diego. San Diego, of course, is the “home turf” …

… Leveraging decades of technological development, dozens of reference genomes … to build this pangenome, including a reassembly of the BTx623 reference genome. This cultivar has been the reference … Development (USAID) also supported the work.   Publication:  Morris, G.P., Harder, A.M., Healey, A.L.  et …

… Kaushal Sharma, one of five Antioch High School rising juniors who participated … program is now an author on a Nucleic Acids Research publication. The paper describes the version 6 data updates … reviewed and assigned NCBI taxonomy name and IDs for nearly 20,000 public/private mtagenome biosamples in GOLD. “Besides …

… expertise and infrastructure enable a broad community of scientists and engineers to leverage our data to develop new algorithms, models and tools in support of DOE mission priorities. Data discoverability and … Notices Data Portal files will be inaccessible July 22–July 24 for computing upgrades . We regret any …

… his backyard in Tennessee — the birds are chirping and a soft breeze ripples through the trees in his backyard. … When Lawrence embarked on his PhD program at UC Merced in 2013, this field was just beginning to develop and expand … fine tune his approach. “I got a lot of that from Zhong.”   Publication: Carrell AA et al. Habitat-adapted microbial …

… Journal publication caps JGI pilot project with fledgling Florida … school scientists. The Florida Everglades evokes images of fanboats skimming over swamps, while alligators peer … ranging from wetlands to tree islands to cattails. In 2018, the US Department of Energy (DOE) Joint Genome …

… Prodcast episode 17. The guest we have this week is Professor Cassandra Quave from Emory University, with joint … the convention went– since the protocol went into force in 2014. There’s now a website that has a lot of resources that … I think on COVID that we’re getting ready to submit for publication and have found some interesting hits for that as …

… researchers built an interactive and comprehensive database of fermentative prokaryotes. The Science Most organisms use … process called fermentation. To better understand the range of bacteria and archaea that rely on this form of metabolism, researchers recently compiled a list of with …

… JGI’s  MycoCosm data portal , an interactive collection of sequenced fungal genomes, omics data and comparative … ) on PhycoCosm tree with several sequenced genomes. 2.  Q: How exactly EcoGroups are built? A: EcoGroups are … While are still working on finalizing the tree and related publication the tree is still in development and not …

… Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … these gaps of knowledge. In a study published November 11, 2022, in Cell Genomics , the team focused on Actinobacteria … resource, but also yielding and supporting many high-impact publications ,” emphasized Markus Göker, who managed the …

… user engagement. The Science In addition to the core set of "primary metabolites"—chemical compounds shared by most … growth and reproduction—most organisms produce a set of "secondary metabolites," chemical compounds that often … more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence …

… Before 2006, Olpidium was one of the many obscure fungi of … attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of … and analysis of their data at the time. Following the publication of their paper in 2011, Dr. Sekimoto from …