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Danielle Goudeau
Danielle operates the single-cell genomics pipeline for JGI collaborators. This work … combines custom flow cytometric analysis, cell sorting, genome amplification, PCR screening, and 16S sequencing. She …
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Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
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Preferential retention of genes from one parental genome after polyploidy illustrates the nature and scope of the genomic conflicts induced by hybridization
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Toward a Standards-Compliant Genomic and Metagenomic Publication Record
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… is only available for a fraction of extant actinobacterial diversity. The article adds to the compendium … using techniques that the JGI has pioneered, including single-cell genomics and metagenomics. The GEBA initiative … resource, but also yielding and supporting many high-impact publications ,” emphasized Markus Göker, who managed the …
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Optofluidic Raman-activated cell sorting for targeted genome retrieval or cultivation of microbial cells with specific functions
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Differences in sequencing technologies improve the retrieval of anammox bacterial genome from metagenomes
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The rhizosphere microbiome of burned holm-oak: potential role of the genus Arthrobacter in the recovery of burned soils
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The Power of One, Amplified
A preview of how large-scale single cell genomics complements metagenomics studies. The Science … more moderate ecosystems. A few years ago, a candidate bacterial lineage was identified from microbial and …
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Rex Malmstrom
… and carbon consumption of SAR11 bacteria, the most abundant bacterial group in the ocean. Later during his postdoctoral … the Microscale Applications group to operate a similar single-cell genomics pipeline that provides JGI users access … dissertation in life sciences 2006 … Education … Selected Publications … Awards and Honors …
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Taking Stock of the Known and Unknown Microbial Space
… technologies have led to an abundance of microbial genomes becoming available to the global research … still unknown.  “We took a deep dive into over 1.8 million bacterial and archaeal genomes to see how much of their … samples where people can go and reinvest time and effort in recovery.” The team plans to convene a discussion later this …
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Assembly, comparative analysis, and utilization of a single haplotype reference genome for soybean
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