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Improving the Cacao Genome and Phytozome
… Global chocolate brands can’t exist without cocoa According to … fungal infections. That’s why Mars, Inc., a maker of chocolate for more than 100 years and one of the world’s … the  HudsonAlpha Institute for Biotechnology . An updated reference genome for  T. cacao has now been completed and …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers … genome data, unlocking new potential for AI-driven studies of energy metabolism. The Science Researchers produced … genomes. The team first applied the workflow to a curated reference set of over 300 genomes spanning the fungal …
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From Competition to Cooperation
… Tracking evolution of symbiotic lifestyles across multiple fungal lineages. The Science By comparing 135 fungal sequenced genomes, researchers were able to carry out a broader … , the work was led by a consortium of researchers from the French National Institute for Agriculture, Food and …
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Frequently Asked Questions: Project Management
… Eukaryotic projects: Kerrie Barry or Vivian Ng Prokaryotic projects: Tijana Glavina del Rio , Danielle Graham , … You can visit the Products & Offerings section of our website for more details, including … The majority of JGI projects come from the user community. Find …
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Doubling Down on Known Protein Families
… Using a novel computational approach, researchers confirm … online Oct. 11, 2023 in  Nature highlights the vast array of functional diversity of microbes through a novel approach … crafted the Novel Metagenome Protein Families (NMPF) Catalog.  “We can now analyze new datasets by comparing …
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JGI@25: From Life at the Extremes to Editing Genomes
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … nature was using it to do something important.” Related Publications:  A scoutRNA Is Required for Some Type V … On Jennifer Doudna's Nobel Prize … Berkeley Lab coverage …
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Offerings & Capabilities
… The central mission of the JGI’s Genomic Technologies department is   ensuring users have access to cutting-edge … Deputy of Genomic Technologies …
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JGI@25: Using Team Science to Build Communities Around Data
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … genomes that are both large and complex. The first publication of a genome generated by the OGG initiative — … Filling in the Plant Tree of Life … Fungal Dataset … Plant Datasets …
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Open Frameworks Training the Next Generation of Scientists
… Educational training technologies provide opportunities for students and professors alike The Science In  PLoS Pathogens , a team of … and genomics. Fungi can be better understood through reference genomes, but unfortunately there are not many … MycoEd receives organizational and developmental support from KBase (The …
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Functional and genetic markers of niche partitioning among enigmatic members of the human oral microbiome
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Jeremy Schmutz
… Mr. Schmutz’s involvement with the JGI dates back to 1997, when he was working for the Stanford … human chromosomes 5, 16, and 19. Following the completion of the Human Genome Project in 2003, he developed … He provides scientific project management for the reference eukaryotic genomes produced by the DOE Joint …
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A Genomic Catalog of Stress Response Genes in Anaerobic Fungi for Applications in Bioproduction
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